Mercurial > repos > public-health-bioinformatics > screen_abricate_report

annotate abricate_report_screening_files.loc.sample @ 3:2262e531c50b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 50a464c3e6f87ca8d2c874842cbcee370d8aa9c4"
author public-health-bioinformatics
date Thu, 02 Jan 2020 17:14:34 -0500
parents b2d56a44a872
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
1 # Expect three columns, tab separated, as follows:
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
4 # - path (Path to the abricate report screening file (tsv format))
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
5 #
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
6 # e.g.
b2d56a44a872 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff changeset
7 # 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv