Mercurial > repos > public-health-bioinformatics > screen_abricate_report
annotate abricate_report_screening_files.loc.sample @ 2:912a3a3dc082 draft
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 2ec76aac2fcf466fc16091bfff8b7cb83fd92467"
author | public-health-bioinformatics |
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date | Thu, 19 Dec 2019 20:31:11 -0500 |
parents | b2d56a44a872 |
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b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
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1 # Expect three columns, tab separated, as follows: |
b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
|
2 # - value (Galaxy records this in the Galaxy DB) |
b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
|
3 # - name (Galaxy shows this in the UI) |
b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
|
4 # - path (Path to the abricate report screening file (tsv format)) |
b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
|
5 # |
b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
|
6 # e.g. |
b2d56a44a872
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
public-health-bioinformatics
parents:
diff
changeset
|
7 # 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv |