Mercurial > repos > q2d2 > qiime2__boots__beta
changeset 1:56ab2e92fc97 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 36ec48f8c55799a0c963733df13da30f19b1bdf3
| author | q2d2 |
|---|---|
| date | Wed, 28 Jan 2026 16:11:56 +0000 |
| parents | 67343e7d89fd |
| children | |
| files | qiime2__boots__beta.xml test-data/alpha.test0.table.qza test-data/alpha.test1.table.qza test-data/beta_collection.test0.table.qza test-data/beta_collection.test1.table.qza test-data/core_metrics.test0.table.qza test-data/core_metrics.test1.table.qza test-data/kmer_diversity.test0.sequences.qza test-data/kmer_diversity.test0.table.qza test-data/resample.test0.table.qza test-data/resample.test1.table.qza |
| diffstat | 11 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/qiime2__boots__beta.xml Sat Nov 01 17:08:48 2025 +0000 +++ b/qiime2__boots__beta.xml Wed Jan 28 16:11:56 2026 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2025, QIIME 2 development team. +Copyright (c) 2026, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2025.10.0) + q2galaxy (version: 2026.1.0) for: - qiime2 (version: 2025.10.0) + qiime2 (version: 2026.1.0) --> -<tool name="qiime2 boots beta" id="qiime2__boots__beta" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 boots beta" id="qiime2__boots__beta" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause"> <description>Perform resampled beta diversity, returning average distance matrix.</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2025.10</container> + <container type="docker">quay.io/qiime2/amplicon:2026.1</container> </requirements> <version_command>q2galaxy version boots</version_command> <command detect_errors="exit_code">q2galaxy run boots beta '$inputs'</command> @@ -26,9 +26,9 @@ <inputs> <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The input feature table."> <options options_filter_attribute="metadata.semantic_type"> - <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> <filter type="add_value" value="FeatureTable[Frequency]"/> <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> + <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> </param> @@ -79,8 +79,8 @@ </param> <param name="average_method" type="select" label="average_method: Str % Choices('non-metric-mean', 'non-metric-median', 'medoid')" display="radio"> <option value="non-metric-mean">non-metric-mean</option> - <option value="non-metric-median" selected="true">non-metric-median</option> - <option value="medoid">medoid</option> + <option value="non-metric-median">non-metric-median</option> + <option value="medoid" selected="true">medoid</option> </param> <param name="bypass_tips" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="bypass_tips: Bool" help="[default: No] Ignore tips of tree in phylogenetic diversity calculations, trading specificity for reduced compute time. This has the effect of collapsing the phylogeny, and is analogous (in concept) to moving from 99% to 97% OTUs."/> <param name="pseudocount" type="integer" min="1" value="1" label="pseudocount: Int % Range(1, None)" help="[default: 1] A pseudocount to handle zeros for compositional metrics. This is ignored for other metrics."/>