# HG changeset patch
# User q2d2
# Date 1762016866 0
# Node ID bc76d21f1948998312552b0ff57f52e507553e2a

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r 000000000000 -r bc76d21f1948 qiime2__boots__beta_average.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__boots__beta_average.xml	Sat Nov 01 17:07:46 2025 +0000
@@ -0,0 +1,68 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2025, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2025.10.0)
+for:
+    qiime2 (version: 2025.10.0)
+-->
+<tool name="qiime2 boots beta-average" id="qiime2__boots__beta_average" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+    <description>Average beta diversity distance matrices.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+    </requirements>
+    <version_command>q2galaxy version boots</version_command>
+    <command detect_errors="exit_code">q2galaxy run boots beta_average '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="data" type="data" format="qza" label="data: Collection[DistanceMatrix]" help="[required]  Distance matrices to be average." multiple="true">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="DistanceMatrix"/>
+            </options>
+        </param>
+        <param name="average_method" type="select" label="average_method: Str % Choices('non-metric-mean', 'non-metric-median', 'medoid')" display="radio">
+            <option value="__q2galaxy__::literal::None">Selection required</option>
+            <option value="non-metric-mean">non-metric-mean</option>
+            <option value="non-metric-median">non-metric-median</option>
+            <option value="medoid">medoid</option>
+            <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="average_distance_matrix" format="qza" label="${tool.name} on ${on_string}: average_distance_matrix.qza" from_work_dir="average_distance_matrix.qza"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: boots beta-average
+===========================
+Average beta diversity distance matrices.
+
+
+Outputs:
+--------
+:average_distance_matrix.qza: The average distance matrix.
+
+|  
+
+Description:
+------------
+Compute the average distance matrix across a collection of distance matrices.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r bc76d21f1948 test-data/alpha.test0.table.qza
Binary file test-data/alpha.test0.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/alpha.test1.table.qza
Binary file test-data/alpha.test1.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/beta_collection.test0.table.qza
Binary file test-data/beta_collection.test0.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/beta_collection.test1.table.qza
Binary file test-data/beta_collection.test1.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/core_metrics.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/core_metrics.test0.metadata.tsv	Sat Nov 01 17:07:46 2025 +0000
@@ -0,0 +1,6 @@
+sample-id	even-or-odd
+#q2:types	categorical
+S1	odd
+S2	even
+S3	odd
+S4	even
diff -r 000000000000 -r bc76d21f1948 test-data/core_metrics.test0.table.qza
Binary file test-data/core_metrics.test0.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/core_metrics.test1.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/core_metrics.test1.metadata.tsv	Sat Nov 01 17:07:46 2025 +0000
@@ -0,0 +1,6 @@
+sample-id	even-or-odd
+#q2:types	categorical
+S1	odd
+S2	even
+S3	odd
+S4	even
diff -r 000000000000 -r bc76d21f1948 test-data/core_metrics.test1.table.qza
Binary file test-data/core_metrics.test1.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/kmer_diversity.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kmer_diversity.test0.metadata.tsv	Sat Nov 01 17:07:46 2025 +0000
@@ -0,0 +1,6 @@
+sample-id	even-or-odd
+#q2:types	categorical
+S1	odd
+S2	even
+S3	odd
+S4	even
diff -r 000000000000 -r bc76d21f1948 test-data/kmer_diversity.test0.sequences.qza
Binary file test-data/kmer_diversity.test0.sequences.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/kmer_diversity.test0.table.qza
Binary file test-data/kmer_diversity.test0.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/resample.test0.table.qza
Binary file test-data/resample.test0.table.qza has changed
diff -r 000000000000 -r bc76d21f1948 test-data/resample.test1.table.qza
Binary file test-data/resample.test1.table.qza has changed