Mercurial > repos > q2d2 > qiime2__boots__resample

annotate qiime2__boots__resample.xml @ 0:ff355b492a7e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
author q2d2
date Sat, 01 Nov 2025 17:08:11 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
1 <?xml version='1.0' encoding='utf-8'?>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
2 <!--
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
3 Copyright (c) 2025, QIIME 2 development team.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
4
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
6 -->
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
7 <!--
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
8 This tool was automatically generated by:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
9 q2galaxy (version: 2025.10.0)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
10 for:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
11 qiime2 (version: 2025.10.0)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
12 -->
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
13 <tool name="qiime2 boots resample" id="qiime2__boots__resample" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
14 <description>Resample feature table, returning `n` feature tables.</description>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
15 <xrefs>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
16 <xref type="bio.tools">qiime2</xref>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
17 </xrefs>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
18 <requirements>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
19 <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
20 </requirements>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
21 <version_command>q2galaxy version boots</version_command>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
22 <command detect_errors="exit_code">q2galaxy run boots resample '$inputs'</command>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
23 <configfiles>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
25 </configfiles>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
26 <inputs>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] The input feature table.">
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
28 <options options_filter_attribute="metadata.semantic_type">
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
29 <filter type="add_value" value="FeatureTable[Frequency]"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
30 </options>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
32 </param>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
33 <param name="sampling_depth" type="integer" min="1" value="" label="sampling_depth: Int % Range(1, None)" help="[required] The total number of observations that each sample in `table` should be resampled to. Samples where the total number of observations in `table` is less than `sampling_depth` will be not be included in the output tables."/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
34 <param name="n" type="integer" min="1" value="" label="n: Int % Range(1, None)" help="[required] The number of resampled tables that should be generated."/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
35 <param name="replacement" type="select" label="replacement: Bool" help="[required] Resample `table` with replacement (i.e., bootstrap) or without replacement (i.e., rarefaction)." display="radio">
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
36 <option value="__q2galaxy__::literal::None">Selection required</option>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
37 <option value="__q2galaxy__::literal::True">Yes</option>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
38 <option value="__q2galaxy__::literal::False">No</option>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
39 <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
40 </param>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
41 </inputs>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
42 <outputs>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
43 <collection name="resampled_tables" type="list">
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
44 <discover_datasets directory="resampled_tables" pattern="__name_and_ext__"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
45 </collection>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
46 </outputs>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
47 <tests>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
48 <test>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
49 <param name="table" value="resample.test0.table.qza" ftype="qza"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
50 <param name="sampling_depth" value="20"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
51 <param name="n" value="10"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
52 <param name="replacement" value="__q2galaxy__::literal::True"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
53 <output_collection name="resampled_tables" type="list"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
54 </test>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
55 <test>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
56 <param name="table" value="resample.test1.table.qza" ftype="qza"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
57 <param name="sampling_depth" value="20"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
58 <param name="n" value="10"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
59 <param name="replacement" value="__q2galaxy__::literal::False"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
60 <output_collection name="resampled_tables" type="list"/>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
61 </test>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
62 </tests>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
63 <help>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
64 QIIME 2: boots resample
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
65 =======================
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
66 Resample feature table, returning `n` feature tables.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
67
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
68
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
69 Outputs:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
70 --------
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
71 :resampled_tables.qza: The `n` resampled tables.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
72
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
73 |
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
74
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
75 Description:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
76 ------------
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
77 Resample `table` to `sampling_depth` total observations with replacement (i.e., bootstrapping) or without replacement (i.e., rarefaction) `n` times, to generate `n` resampled feature tables.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
78
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
79 Examples:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
80 ---------
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
81
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
82 Generate 10 bootstrapped tables.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
83 ********************************
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
84 Using the ``qiime2 boots resample`` tool:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
85 #. Set *"table"* to ``#: table.qza``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
86 #. Set *"sampling_depth"* to ``20``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
87 #. Set *"n"* to ``10``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
88 #. Set *"replacement"* to ``Yes``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
89 #. Press the ``Execute`` button.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
90
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
91 Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
92 (Renaming is optional, but it will make any subsequent steps easier to complete.)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
93
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
94 .. list-table::
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
95 :align: left
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
96 :header-rows: 1
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
97
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
98 * - History Name
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
99 - *"Name"* to set (be sure to press ``Save``)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
100 * - ``#: qiime2 boots resample [...] : resampled_tables.qza``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
101 - ``bootstrapped-tables/``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
102
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
103 Generate 10 rarefied tables.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
104 ****************************
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
105 Using the ``qiime2 boots resample`` tool:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
106 #. Set *"table"* to ``#: table.qza``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
107 #. Set *"sampling_depth"* to ``20``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
108 #. Set *"n"* to ``10``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
109 #. Set *"replacement"* to ``No``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
110 #. Press the ``Execute`` button.
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
111
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
112 Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
113 (Renaming is optional, but it will make any subsequent steps easier to complete.)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
114
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
115 .. list-table::
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
116 :align: left
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
117 :header-rows: 1
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
118
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
119 * - History Name
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
120 - *"Name"* to set (be sure to press ``Save``)
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
121 * - ``#: qiime2 boots resample [...] : resampled_tables.qza``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
122 - ``rarefaction-tables/``
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
123
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
124
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
125 |
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
126
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
127 </help>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
128 <citations>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
129 <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
130 <citation type="doi">10.1038/s41587-019-0209-9</citation>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
131 </citations>
ff355b492a7e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
q2d2
parents:
diff changeset
132 </tool>