# HG changeset patch
# User q2d2
# Date 1746470480 0
# Node ID 68d6090cd22698b8ec03a12220cec01e630f3ac7
# Parent e2822b9553cb35b632c32552a49929fcd8a48b26
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit b1fccfb38b4873cd4699743033449014a2978e7d
diff -r e2822b9553cb -r 68d6090cd226 qiime2__composition__add_pseudocount.xml
--- a/qiime2__composition__add_pseudocount.xml Wed Oct 30 19:36:09 2024 +0000
+++ b/qiime2__composition__add_pseudocount.xml Mon May 05 18:41:20 2025 +0000
@@ -1,22 +1,22 @@
<?xml version='1.0' encoding='utf-8'?>
<!--
-Copyright (c) 2024, QIIME 2 development team.
+Copyright (c) 2025, QIIME 2 development team.
Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
- q2galaxy (version: 2024.10.0)
+ q2galaxy (version: 2025.4.0)
for:
- qiime2 (version: 2024.10.1)
+ qiime2 (version: 2025.4.0)
-->
-<tool name="qiime2 composition add-pseudocount" id="qiime2__composition__add_pseudocount" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 composition add-pseudocount" id="qiime2__composition__add_pseudocount" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
<description>Add pseudocount to table.</description>
<xrefs>
<xref type="bio.tools">qiime2</xref>
</xrefs>
<requirements>
- <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+ <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
</requirements>
<version_command>q2galaxy version composition</version_command>
<command detect_errors="exit_code">q2galaxy run composition add_pseudocount '$inputs'</command>
diff -r e2822b9553cb -r 68d6090cd226 test-data/ancombc.test0.table.qza
Binary file test-data/ancombc.test0.table.qza has changed
diff -r e2822b9553cb -r 68d6090cd226 test-data/ancombc.test1.table.qza
Binary file test-data/ancombc.test1.table.qza has changed
diff -r e2822b9553cb -r 68d6090cd226 test-data/ancombc2.test0.metadata.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ancombc2.test0.metadata.tsv Mon May 05 18:41:20 2025 +0000
@@ -0,0 +1,39 @@
+sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn
+#q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical
+L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A
+L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z
+L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z
+L1S105 AGTGCGATGCGT gut 3 17 subject-1 cat test2 value A
+L2S155 ACGATGCGACCA left palm 1 20 subject-1 cat test1 value A
+L2S175 AGCTATCCACGA left palm 2 17 subject-1 cat test2 value A
+L2S204 ATGCAGCTCAGT left palm 3 17 subject-1 bird test1 value Z
+L2S222 CACGTGACATGT left palm 4 14 subject-1 cow test2 value Z
+L3S242 ACAGTTGCGCGA right palm 10 28 subject-1 bird test1 value A
+L3S294 CACGACAGGCTA right palm 1 20 subject-1 dog test2 value Z
+L3S313 AGTGTCACGGTG right palm 2 17 subject-1 dog test1 value Z
+L3S341 CAAGTGAGAGAG right palm 3 17 subject-1 cat test2 value Z
+L3S360 CATCGTATCAAC right palm 4 14 subject-1 cat test1 value A
+L5S104 CAGTGTCAGGAC tongue 10 28 subject-1 bird test2 value A
+L5S155 ATCTTAGACTGC tongue 1 20 subject-1 cow test1 value Z
+L5S174 CAGACATTGCGT tongue 2 17 subject-1 dog test2 value A
+L5S203 CGATGCACCAGA tongue 3 17 subject-1 cat test1 value Z
+L5S222 CTAGAGACTCTT tongue 4 14 subject-1 bird test2 value Z
+L1S140 ATGGCAGCTCTA gut 10 28 subject-2 dog test1 value Z
+L1S208 CTGAGATACGCG gut 1 20 subject-2 dog test2 value A
+L1S257 CCGACTGAGATG gut 3 17 subject-2 dog test1 value A
+L1S281 CCTCTCGTGATC gut 4 14 subject-2 cat test2 value Z
+L2S240 CATATCGCAGTT left palm 10 28 subject-2 cat test1 value A
+L2S309 CGTGCATTATCA left palm 1 20 subject-2 cat test2 value A
+L2S357 CTAACGCAGTCA left palm 3 17 subject-2 bird test1 value Z
+L2S382 CTCAATGACTCA left palm 4 14 subject-2 bird test2 value A
+L3S378 ATCGATCTGTGG right palm 10 28 subject-2 cow test1 value Z
+L4S63 CTCGTGGAGTAG right palm 1 20 subject-2 dog test2 value Z
+L4S112 GCGTTACACACA right palm 3 17 subject-2 cat test1 value A
+L4S137 GAACTGTATCTC right palm 4 14 subject-2 bird test2 value A
+L5S240 CTGGACTCATAG tongue 10 28 subject-2 dog test1 value A
+L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z
+L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z
+L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z
+L6SD93 GCGTTACACACA toe 3 17 subject-2 dog test1 value
+L6SD20 GAACTGTATCTC toe 4 14 subject-2 bird test2 value
+L6SD68 CTGGACTCATAG toe 10 28 subject-2 cow test1 value
diff -r e2822b9553cb -r 68d6090cd226 test-data/ancombc2.test0.table.qza
Binary file test-data/ancombc2.test0.table.qza has changed
diff -r e2822b9553cb -r 68d6090cd226 test-data/ancombc2.test1.metadata.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ancombc2.test1.metadata.tsv Mon May 05 18:41:20 2025 +0000
@@ -0,0 +1,39 @@
+sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn
+#q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical
+L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A
+L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z
+L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z
+L1S105 AGTGCGATGCGT gut 3 17 subject-1 cat test2 value A
+L2S155 ACGATGCGACCA left palm 1 20 subject-1 cat test1 value A
+L2S175 AGCTATCCACGA left palm 2 17 subject-1 cat test2 value A
+L2S204 ATGCAGCTCAGT left palm 3 17 subject-1 bird test1 value Z
+L2S222 CACGTGACATGT left palm 4 14 subject-1 cow test2 value Z
+L3S242 ACAGTTGCGCGA right palm 10 28 subject-1 bird test1 value A
+L3S294 CACGACAGGCTA right palm 1 20 subject-1 dog test2 value Z
+L3S313 AGTGTCACGGTG right palm 2 17 subject-1 dog test1 value Z
+L3S341 CAAGTGAGAGAG right palm 3 17 subject-1 cat test2 value Z
+L3S360 CATCGTATCAAC right palm 4 14 subject-1 cat test1 value A
+L5S104 CAGTGTCAGGAC tongue 10 28 subject-1 bird test2 value A
+L5S155 ATCTTAGACTGC tongue 1 20 subject-1 cow test1 value Z
+L5S174 CAGACATTGCGT tongue 2 17 subject-1 dog test2 value A
+L5S203 CGATGCACCAGA tongue 3 17 subject-1 cat test1 value Z
+L5S222 CTAGAGACTCTT tongue 4 14 subject-1 bird test2 value Z
+L1S140 ATGGCAGCTCTA gut 10 28 subject-2 dog test1 value Z
+L1S208 CTGAGATACGCG gut 1 20 subject-2 dog test2 value A
+L1S257 CCGACTGAGATG gut 3 17 subject-2 dog test1 value A
+L1S281 CCTCTCGTGATC gut 4 14 subject-2 cat test2 value Z
+L2S240 CATATCGCAGTT left palm 10 28 subject-2 cat test1 value A
+L2S309 CGTGCATTATCA left palm 1 20 subject-2 cat test2 value A
+L2S357 CTAACGCAGTCA left palm 3 17 subject-2 bird test1 value Z
+L2S382 CTCAATGACTCA left palm 4 14 subject-2 bird test2 value A
+L3S378 ATCGATCTGTGG right palm 10 28 subject-2 cow test1 value Z
+L4S63 CTCGTGGAGTAG right palm 1 20 subject-2 dog test2 value Z
+L4S112 GCGTTACACACA right palm 3 17 subject-2 cat test1 value A
+L4S137 GAACTGTATCTC right palm 4 14 subject-2 bird test2 value A
+L5S240 CTGGACTCATAG tongue 10 28 subject-2 dog test1 value A
+L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z
+L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z
+L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z
+L6SD93 GCGTTACACACA toe 3 17 subject-2 dog test1 value
+L6SD20 GAACTGTATCTC toe 4 14 subject-2 bird test2 value
+L6SD68 CTGGACTCATAG toe 10 28 subject-2 cow test1 value
diff -r e2822b9553cb -r 68d6090cd226 test-data/ancombc2.test1.table.qza
Binary file test-data/ancombc2.test1.table.qza has changed