Mercurial > repos > q2d2 > qiime2__composition__ancombc2_visualizer
comparison qiime2__composition__ancombc2_visualizer.xml @ 0:17866bd6d1d4 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit b1fccfb38b4873cd4699743033449014a2978e7d
| author | q2d2 |
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| date | Mon, 05 May 2025 18:41:32 +0000 |
| parents | |
| children | 9b72b43eba04 |
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| -1:000000000000 | 0:17866bd6d1d4 |
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| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <!-- | |
| 3 Copyright (c) 2025, QIIME 2 development team. | |
| 4 | |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
| 6 --> | |
| 7 <!-- | |
| 8 This tool was automatically generated by: | |
| 9 q2galaxy (version: 2025.4.0) | |
| 10 for: | |
| 11 qiime2 (version: 2025.4.0) | |
| 12 --> | |
| 13 <tool name="qiime2 composition ancombc2-visualizer" id="qiime2__composition__ancombc2_visualizer" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> | |
| 14 <description>Visualize ANCOMBC2 output.</description> | |
| 15 <xrefs> | |
| 16 <xref type="bio.tools">qiime2</xref> | |
| 17 </xrefs> | |
| 18 <requirements> | |
| 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container> | |
| 20 </requirements> | |
| 21 <version_command>q2galaxy version composition</version_command> | |
| 22 <command detect_errors="exit_code">q2galaxy run composition ancombc2_visualizer '$inputs'</command> | |
| 23 <configfiles> | |
| 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> | |
| 25 </configfiles> | |
| 26 <inputs> | |
| 27 <param name="data" type="data" format="qza" label="data: FeatureData[ANCOMBC2Output]" help="[required] The ANCOMBC2 output to visualize."> | |
| 28 <options options_filter_attribute="metadata.semantic_type"> | |
| 29 <filter type="add_value" value="FeatureData[ANCOMBC2Output]"/> | |
| 30 </options> | |
| 31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[ANCOMBC2Output]']</validator> | |
| 32 </param> | |
| 33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | |
| 34 <param name="taxonomy" type="data" format="qza" optional="true" label="taxonomy: FeatureData[Taxonomy]" help="[optional] The taxonomy associated with the features present in the ANCOMBC2 data."> | |
| 35 <options options_filter_attribute="metadata.semantic_type"> | |
| 36 <filter type="add_value" value="FeatureData[Taxonomy]"/> | |
| 37 </options> | |
| 38 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Taxonomy]']</validator> | |
| 39 </param> | |
| 40 </section> | |
| 41 </inputs> | |
| 42 <outputs> | |
| 43 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> | |
| 44 </outputs> | |
| 45 <tests/> | |
| 46 <help> | |
| 47 QIIME 2: composition ancombc2-visualizer | |
| 48 ======================================== | |
| 49 Visualize ANCOMBC2 output. | |
| 50 | |
| 51 | |
| 52 Outputs: | |
| 53 -------- | |
| 54 :visualization.qzv: <no description> | |
| 55 | |
| 56 | | |
| 57 | |
| 58 Description: | |
| 59 ------------ | |
| 60 Displays ANCOMBC2 Log-Fold Change values in a barplot and allows filtering based on p-value and standard error. If a taxonomy is provided, features can be filtered by taxonomy using an interactive tree. | |
| 61 | |
| 62 | |
| 63 | | |
| 64 | |
| 65 </help> | |
| 66 <citations> | |
| 67 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
| 68 </citations> | |
| 69 </tool> |