Mercurial > repos > q2d2 > qiime2__composition__tabulate
comparison qiime2__composition__tabulate.xml @ 0:359aa4321add draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 69da7976573cc07a363ac66bdacc9269d7cd3732
| author | q2d2 |
|---|---|
| date | Fri, 13 Jan 2023 22:04:52 +0000 |
| parents | |
| children | 54caf7f5c410 |
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| -1:000000000000 | 0:359aa4321add |
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| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <!-- | |
| 3 Copyright (c) 2023, QIIME 2 development team. | |
| 4 | |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
| 6 --> | |
| 7 <!-- | |
| 8 This tool was automatically generated by: | |
| 9 q2galaxy (version: 2022.11.1) | |
| 10 for: | |
| 11 qiime2 (version: 2022.11.1) | |
| 12 --> | |
| 13 <tool name="qiime2 composition tabulate" id="qiime2__composition__tabulate" version="2022.11.2+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> | |
| 14 <description> View tabular output from ANCOM-BC.</description> | |
| 15 <requirements> | |
| 16 <container type="docker">quay.io/qiime2/core:2022.11</container> | |
| 17 </requirements> | |
| 18 <version_command>q2galaxy version composition</version_command> | |
| 19 <command detect_errors="exit_code">q2galaxy run composition tabulate '$inputs'</command> | |
| 20 <configfiles> | |
| 21 <inputs name="inputs" data_style="paths"/> | |
| 22 </configfiles> | |
| 23 <inputs> | |
| 24 <param name="data" type="data" format="qza" label="data: FeatureData[DifferentialAbundance]" help="[required] The ANCOM-BC output to be tabulated."> | |
| 25 <options options_filter_attribute="metadata.semantic_type"> | |
| 26 <filter type="add_value" value="FeatureData[DifferentialAbundance]"/> | |
| 27 </options> | |
| 28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[DifferentialAbundance]']</validator> | |
| 29 </param> | |
| 30 </inputs> | |
| 31 <outputs> | |
| 32 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> | |
| 33 </outputs> | |
| 34 <tests/> | |
| 35 <help> | |
| 36 QIIME 2: composition tabulate | |
| 37 ============================= | |
| 38 View tabular output from ANCOM-BC. | |
| 39 | |
| 40 | |
| 41 Outputs: | |
| 42 -------- | |
| 43 :visualization.qzv: <no description> | |
| 44 | |
| 45 | | |
| 46 | |
| 47 Description: | |
| 48 ------------ | |
| 49 Generate tabular view of ANCOM-BC output, which includes per-page views for the log-fold change (lfc), standard error (se), P values, Q values, and W scores. | |
| 50 | |
| 51 | |
| 52 | | |
| 53 | |
| 54 </help> | |
| 55 <citations> | |
| 56 <citation type="doi">10.3402/mehd.v26.27663</citation> | |
| 57 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
| 58 </citations> | |
| 59 </tool> |