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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit b1fccfb38b4873cd4699743033449014a2978e7d
author q2d2
date Mon, 05 May 2025 18:41:25 +0000
parents cb1a60431256
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4:cb1a60431256 5:600f11a2839d
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2024, QIIME 2 development team. 3 Copyright (c) 2025, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.10.0) 9 q2galaxy (version: 2025.4.0)
10 for: 10 for:
11 qiime2 (version: 2024.10.1) 11 qiime2 (version: 2025.4.0)
12 --> 12 -->
13 <tool name="qiime2 composition tabulate" id="qiime2__composition__tabulate" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 composition tabulate" id="qiime2__composition__tabulate" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
14 <description> View tabular output from ANCOM-BC.</description> 14 <description> View tabular output from ANCOM-BC or ANCOM-BC2.</description>
15 <xrefs> 15 <xrefs>
16 <xref type="bio.tools">qiime2</xref> 16 <xref type="bio.tools">qiime2</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container> 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
20 </requirements> 20 </requirements>
21 <version_command>q2galaxy version composition</version_command> 21 <version_command>q2galaxy version composition</version_command>
22 <command detect_errors="exit_code">q2galaxy run composition tabulate '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run composition tabulate '$inputs'</command>
23 <configfiles> 23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
25 </configfiles> 25 </configfiles>
26 <inputs> 26 <inputs>
27 <param name="data" type="data" format="qza" label="data: FeatureData[DifferentialAbundance]" help="[required] The ANCOM-BC output to be tabulated."> 27 <param name="data" type="data" format="qza" label="data: FeatureData[DifferentialAbundance | ANCOMBC2Output]" help="[required] The ANCOM-BC or ANCOM-BC2 output to be tabulated.">
28 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="FeatureData[ANCOMBC2Output]"/>
29 <filter type="add_value" value="FeatureData[DifferentialAbundance]"/> 30 <filter type="add_value" value="FeatureData[DifferentialAbundance]"/>
30 </options> 31 </options>
31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[DifferentialAbundance]']</validator> 32 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[ANCOMBC2Output]', 'FeatureData[DifferentialAbundance]']</validator>
32 </param> 33 </param>
33 </inputs> 34 </inputs>
34 <outputs> 35 <outputs>
35 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> 36 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
36 </outputs> 37 </outputs>
37 <tests/> 38 <tests/>
38 <help> 39 <help>
39 QIIME 2: composition tabulate 40 QIIME 2: composition tabulate
40 ============================= 41 =============================
41 View tabular output from ANCOM-BC. 42 View tabular output from ANCOM-BC or ANCOM-BC2.
42 43
43 44
44 Outputs: 45 Outputs:
45 -------- 46 --------
46 :visualization.qzv: &lt;no description&gt; 47 :visualization.qzv: &lt;no description&gt;
47 48
48 | 49 |
49 50
50 Description: 51 Description:
51 ------------ 52 ------------
52 Generate tabular view of ANCOM-BC output, which includes per-page views for the log-fold change (lfc), standard error (se), P values, Q values, and W scores. 53 Generate tabular view of ANCOM-BC or ANCOM-BC2 output, which includes per-page views for the log-fold change (lfc), standard error (se), P values, Q values, and W scores.
53 54
54 55
55 | 56 |
56 57
57 </help> 58 </help>