Mercurial > repos > q2d2 > qiime2__composition__tabulate

diff qiime2__composition__tabulate.xml @ 5:600f11a2839d draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit b1fccfb38b4873cd4699743033449014a2978e7d
author q2d2
date Mon, 05 May 2025 18:41:25 +0000
parents cb1a60431256
children
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--- a/qiime2__composition__tabulate.xml	Wed Oct 30 19:36:12 2024 +0000
+++ b/qiime2__composition__tabulate.xml	Mon May 05 18:41:25 2025 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2024, QIIME 2 development team.
+Copyright (c) 2025, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.10.0)
+    q2galaxy (version: 2025.4.0)
 for:
-    qiime2 (version: 2024.10.1)
+    qiime2 (version: 2025.4.0)
 -->
-<tool name="qiime2 composition tabulate" id="qiime2__composition__tabulate" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
-    <description> View tabular output from ANCOM-BC.</description>
+<tool name="qiime2 composition tabulate" id="qiime2__composition__tabulate" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
+    <description> View tabular output from ANCOM-BC or ANCOM-BC2.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
     </requirements>
     <version_command>q2galaxy version composition</version_command>
     <command detect_errors="exit_code">q2galaxy run composition tabulate '$inputs'</command>
@@ -24,11 +24,12 @@
         <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
-        <param name="data" type="data" format="qza" label="data: FeatureData[DifferentialAbundance]" help="[required]  The ANCOM-BC output to be tabulated.">
+        <param name="data" type="data" format="qza" label="data: FeatureData[DifferentialAbundance | ANCOMBC2Output]" help="[required]  The ANCOM-BC or ANCOM-BC2 output to be tabulated.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureData[ANCOMBC2Output]"/>
                 <filter type="add_value" value="FeatureData[DifferentialAbundance]"/>
             </options>
-            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[DifferentialAbundance]']</validator>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[ANCOMBC2Output]', 'FeatureData[DifferentialAbundance]']</validator>
         </param>
     </inputs>
     <outputs>
@@ -38,7 +39,7 @@
     <help>
 QIIME 2: composition tabulate
 =============================
- View tabular output from ANCOM-BC.
+ View tabular output from ANCOM-BC or ANCOM-BC2.
 
 
 Outputs:
@@ -49,7 +50,7 @@
 
 Description:
 ------------
-Generate tabular view of ANCOM-BC output, which includes per-page views for the log-fold change (lfc), standard error (se), P values, Q values, and W scores.
+Generate tabular view of ANCOM-BC or ANCOM-BC2 output, which includes per-page views for the log-fold change (lfc), standard error (se), P values, Q values, and W scores.
 
 
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