# HG changeset patch
# User q2d2
# Date 1714078428 0
# Node ID d3cdc3eafc41b5f08a4e98fa456e07f2dd3b8aac
# Parent  b7fc07bacdb20ce4c447107aede2df8f2e795a05
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__cutadapt commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r b7fc07bacdb2 -r d3cdc3eafc41 qiime2__cutadapt__trim_paired.xml
--- a/qiime2__cutadapt__trim_paired.xml	Thu Jun 08 19:35:06 2023 +0000
+++ b/qiime2__cutadapt__trim_paired.xml	Thu Apr 25 20:53:48 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 cutadapt trim-paired" id="qiime2__cutadapt__trim_paired" version="2023.5.1+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 cutadapt trim-paired" id="qiime2__cutadapt__trim_paired" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Find and remove adapters in demultiplexed paired-end sequences.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version cutadapt</version_command>
     <command detect_errors="exit_code">q2galaxy run cutadapt trim_paired '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="demultiplexed_sequences" type="data" format="qza" label="demultiplexed_sequences: SampleData[PairedEndSequencesWithQuality]" help="[required]  The paired-end sequences to be trimmed.">
@@ -28,7 +28,6 @@
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]']</validator>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
-            <param name="cores" type="integer" min="1" value="1" label="cores: Int % Range(1, None)" help="[default: 1]  Number of CPU cores to use."/>
             <repeat name="adapter_f" help="[optional]  Sequence of an adapter ligated to the 3' end. The adapter and any subsequent bases are trimmed. If a `$` is appended, the adapter is only found if it is at the end of the read. Search in forward read. If your sequence of interest is &quot;framed&quot; by a 5' and a 3' adapter, use this parameter to define a &quot;linked&quot; primer - see https://cutadapt.readthedocs.io for complete details." title="adapter_f: List[Str]">
                 <param name="element" type="text" label="element: Str" help="[required]">
                     <sanitizer>
diff -r b7fc07bacdb2 -r d3cdc3eafc41 test-data/demux_paired.test0.seqs.qza
Binary file test-data/demux_paired.test0.seqs.qza has changed
diff -r b7fc07bacdb2 -r d3cdc3eafc41 test-data/demux_single.test0.seqs.qza
Binary file test-data/demux_single.test0.seqs.qza has changed