# HG changeset patch
# User q2d2
# Date 1762017028 0
# Node ID 3e2a146511b06fd7ef89e9e0dea8090d667cec92
# Parent  4d29020147f38b087738e14cc2adcfebf38bb1d0
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r 4d29020147f3 -r 3e2a146511b0 qiime2__dada2__denoise_ccs.xml
--- a/qiime2__dada2__denoise_ccs.xml	Tue Jul 15 21:48:32 2025 +0000
+++ b/qiime2__dada2__denoise_ccs.xml	Sat Nov 01 17:10:28 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.7.0)
+    q2galaxy (version: 2025.10.0)
 for:
-    qiime2 (version: 2025.7.0)
+    qiime2 (version: 2025.10.0)
 -->
-<tool name="qiime2 dada2 denoise-ccs" id="qiime2__dada2__denoise_ccs" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 dada2 denoise-ccs" id="qiime2__dada2__denoise_ccs" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Denoise and dereplicate single-end Pacbio CCS</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
     </requirements>
     <version_command>q2galaxy version dada2</version_command>
     <command detect_errors="exit_code">q2galaxy run dada2 denoise_ccs '$inputs'</command>
@@ -80,6 +80,7 @@
         <data name="table" format="qza" label="${tool.name} on ${on_string}: table.qza" from_work_dir="table.qza"/>
         <data name="representative_sequences" format="qza" label="${tool.name} on ${on_string}: representative_sequences.qza" from_work_dir="representative_sequences.qza"/>
         <data name="denoising_stats" format="qza" label="${tool.name} on ${on_string}: denoising_stats.qza" from_work_dir="denoising_stats.qza"/>
+        <data name="base_transition_stats" format="qza" label="${tool.name} on ${on_string}: base_transition_stats.qza" from_work_dir="base_transition_stats.qza"/>
     </outputs>
     <tests/>
     <help>
@@ -92,7 +93,8 @@
 --------
 :table.qza: The resulting feature table.
 :representative_sequences.qza: The resulting feature sequences. Each feature in the feature table will be represented by exactly one sequence.
-:denoising_stats.qza: &lt;no description&gt;
+:denoising_stats.qza: A table listing per-sample read retention counts and percentages after each stage of the pipeline.
+:base_transition_stats.qza: A table listing the transition rates of each ordered pair of nucleotides at each quality score.
 
 |  
 
diff -r 4d29020147f3 -r 3e2a146511b0 test-data/denoise_paired.test0.demux-paired.qza
Binary file test-data/denoise_paired.test0.demux-paired.qza has changed
diff -r 4d29020147f3 -r 3e2a146511b0 test-data/denoise_single.test0.demux-single.qza
Binary file test-data/denoise_single.test0.demux-single.qza has changed