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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author | q2d2 |
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date | Mon, 29 Aug 2022 19:26:13 +0000 |
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children | e62bac3eb4af |
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<?xml version='1.0' encoding='utf-8'?> <!-- Copyright (c) 2022, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: q2galaxy (version: 2022.8.1) for: qiime2 (version: 2022.8.1) --> <tool name="qiime2 deblur visualize-stats" id="qiime2__deblur__visualize_stats" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> <description>Visualize Deblur stats per sample.</description> <requirements> <container type="docker">quay.io/qiime2/core:2022.8</container> </requirements> <version_command>q2galaxy version deblur</version_command> <command detect_errors="aggressive">q2galaxy run deblur visualize_stats '$inputs'</command> <configfiles> <inputs name="inputs" data_style="paths"/> </configfiles> <inputs> <param name="deblur_stats" type="data" format="qza" label="deblur_stats: DeblurStats" help="[required] Summary statistics of the Deblur process."> <options options_filter_attribute="metadata.semantic_type"> <filter type="add_value" value="DeblurStats"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['DeblurStats']</validator> </param> </inputs> <outputs> <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> </outputs> <tests/> <help> QIIME 2: deblur visualize-stats =============================== Visualize Deblur stats per sample. Outputs: -------- :visualization.qzv: <no description> | Description: ------------ Display Deblur statistics per sample | </help> <citations> <citation type="bibtex">@article{cite1, author = {Amir, Amnon and McDonald, Daniel and Navas-Molina, Jose A and Kopylova, Evguenia and Morton, James T and Xu, Zhenjiang Zech and Kightley, Eric P and Thompson, Luke R and Hyde, Embriette R and Gonzalez, Antonio and Knight, Rob}, journal = {MSystems}, number = {2}, pages = {e00191--16}, publisher = {Am Soc Microbiol}, title = {Deblur rapidly resolves single-nucleotide community sequence patterns}, volume = {2}, year = {2017} } </citation> <citation type="doi">10.1038/s41587-019-0209-9</citation> </citations> </tool>