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comparison qiime2__demux__filter_samples.xml @ 4:b507d1f2196c draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit c7e80dcda727ce63b42aa8a946e9330310929797
author q2d2
date Mon, 03 Jun 2024 23:18:11 +0000
parents a23769ef6bd8
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3:a23769ef6bd8 4:b507d1f2196c
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.2.1) 9 q2galaxy (version: 2024.5.0)
10 for: 10 for:
11 qiime2 (version: 2024.2.0) 11 qiime2 (version: 2024.5.0)
12 --> 12 -->
13 <tool name="qiime2 demux filter-samples" id="qiime2__demux__filter_samples" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 demux filter-samples" id="qiime2__demux__filter_samples" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
14 <description>Filter samples out of demultiplexed data.</description> 14 <description>Filter samples out of demultiplexed data.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version demux</version_command> 18 <version_command>q2galaxy version demux</version_command>
19 <command detect_errors="exit_code">q2galaxy run demux filter_samples '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run demux filter_samples '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality¹ | PairedEndSequencesWithQuality² | JoinedSequencesWithQuality³]" help="[required] The demultiplexed data from which samples should be filtered."> 24 <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality¹ | PairedEndSequencesWithQuality² | JoinedSequencesWithQuality³]" help="[required] The demultiplexed data from which samples should be filtered.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
26 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> 27 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
27 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
28 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> 28 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
29 </options> 29 </options>
30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
31 </param> 31 </param>
32 <repeat name="metadata" min="1" help="[required] Sample metadata indicating which sample ids to filter. The optional `where` parameter may be used to filter ids based on specified conditions in the metadata. The optional `exclude_ids` parameter may be used to exclude the ids specified in the metadata from the filter." title="metadata: Metadata"> 32 <repeat name="metadata" min="1" help="[required] Sample metadata indicating which sample ids to filter. The optional `where` parameter may be used to filter ids based on specified conditions in the metadata. The optional `exclude_ids` parameter may be used to exclude the ids specified in the metadata from the filter." title="metadata: Metadata">