# HG changeset patch
# User q2d2
# Date 1752616158 0
# Node ID e3d4217c9a64bf2e29e7b6822d5d287b27086155
# Parent  4a7e51ec568943615fceb52a6edb65793019bc56
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0

diff -r 4a7e51ec5689 -r e3d4217c9a64 qiime2__demux__filter_samples.xml
--- a/qiime2__demux__filter_samples.xml	Mon May 05 18:42:52 2025 +0000
+++ b/qiime2__demux__filter_samples.xml	Tue Jul 15 21:49:18 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.4.0)
+    q2galaxy (version: 2025.7.0)
 for:
-    qiime2 (version: 2025.4.0)
+    qiime2 (version: 2025.7.0)
 -->
-<tool name="qiime2 demux filter-samples" id="qiime2__demux__filter_samples" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 demux filter-samples" id="qiime2__demux__filter_samples" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
     <description>Filter samples out of demultiplexed data.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
     </requirements>
     <version_command>q2galaxy version demux</version_command>
     <command detect_errors="exit_code">q2galaxy run demux filter_samples '$inputs'</command>
@@ -26,8 +26,8 @@
     <inputs>
         <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality¹ | PairedEndSequencesWithQuality² | JoinedSequencesWithQuality³]" help="[required]  The demultiplexed data from which samples should be filtered.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
-                <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
diff -r 4a7e51ec5689 -r e3d4217c9a64 test-data/emp_single.test0.sequences.qza
Binary file test-data/emp_single.test0.sequences.qza has changed
diff -r 4a7e51ec5689 -r e3d4217c9a64 test-data/summarize.test0.demux.qza
Binary file test-data/summarize.test0.demux.qza has changed