Mercurial > repos > q2d2 > qiime2__demux__partition_samples_single

comparison qiime2__demux__partition_samples_single.xml @ 2:bc1a46b06436 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:37:36 +0000
parents 84111e1c01f0
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1:84111e1c01f0 2:bc1a46b06436
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.5.0) 9 q2galaxy (version: 2024.10.0)
10 for: 10 for:
11 qiime2 (version: 2024.5.0) 11 qiime2 (version: 2024.10.1)
12 --> 12 -->
13 <tool name="qiime2 demux partition-samples-single" id="qiime2__demux__partition_samples_single" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 demux partition-samples-single" id="qiime2__demux__partition_samples_single" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Split demultiplexed sequence data into partitions.</description> 14 <description>Split demultiplexed sequence data into partitions.</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
15 <requirements> 18 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> 19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
17 </requirements> 20 </requirements>
18 <version_command>q2galaxy version demux</version_command> 21 <version_command>q2galaxy version demux</version_command>
19 <command detect_errors="exit_code">q2galaxy run demux partition_samples_single '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run demux partition_samples_single '$inputs'</command>
20 <configfiles> 23 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 25 </configfiles>
23 <inputs> 26 <inputs>
24 <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality]" help="[required] The demultiplexed sequences to partition."> 27 <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality¹ | JoinedSequencesWithQuality²]" help="[required] The demultiplexed sequences to partition.">
25 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
26 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> 30 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
27 </options> 31 </options>
28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[SequencesWithQuality]']</validator> 32 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
29 </param> 33 </param>
30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 34 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
31 <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional] The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/> 35 <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional] The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/>
32 </section> 36 </section>
33 </inputs> 37 </inputs>