Mercurial > repos > q2d2 > qiime2__demux__subsample_single

comparison qiime2__demux__subsample_single.xml @ 4:26139ebc17ea draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit c7e80dcda727ce63b42aa8a946e9330310929797
author q2d2
date Mon, 03 Jun 2024 23:18:08 +0000
parents 4c598bbefcbb
children 76384b6b3d90
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3:4c598bbefcbb 4:26139ebc17ea
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.2.1) 9 q2galaxy (version: 2024.5.0)
10 for: 10 for:
11 qiime2 (version: 2024.2.0) 11 qiime2 (version: 2024.5.0)
12 --> 12 -->
13 <tool name="qiime2 demux subsample-single" id="qiime2__demux__subsample_single" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 demux subsample-single" id="qiime2__demux__subsample_single" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
14 <description>Subsample single-end sequences without replacement.</description> 14 <description>Subsample single-end sequences without replacement.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version demux</version_command> 18 <version_command>q2galaxy version demux</version_command>
19 <command detect_errors="exit_code">q2galaxy run demux subsample_single '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run demux subsample_single '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="sequences" type="data" format="qza" label="sequences: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality]" help="[required] The demultiplexed sequences to be subsampled."> 24 <param name="sequences" type="data" format="qza" label="sequences: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality]" help="[required] The demultiplexed sequences to be subsampled.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
26 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> 27 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
27 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
28 </options> 28 </options>
29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> 29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
30 </param> 30 </param>
31 <param name="fraction" type="float" min="1e-06" max="0.999999" value="" label="fraction: Float % Range(0, 1, inclusive_start=False)" help="[required] The fraction of sequences to retain in subsample."/> 31 <param name="fraction" type="float" min="1e-06" max="0.999999" value="" label="fraction: Float % Range(0, 1, inclusive_start=False)" help="[required] The fraction of sequences to retain in subsample."/>
32 </inputs> 32 </inputs>