Mercurial > repos > q2d2 > qiime2__demux__summarize

comparison qiime2__demux__summarize.xml @ 5:1a13e87462a0 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:37:22 +0000
parents acb0f8837379
children
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4:acb0f8837379 5:1a13e87462a0
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.5.0) 9 q2galaxy (version: 2024.10.0)
10 for: 10 for:
11 qiime2 (version: 2024.5.0) 11 qiime2 (version: 2024.10.1)
12 --> 12 -->
13 <tool name="qiime2 demux summarize" id="qiime2__demux__summarize" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 demux summarize" id="qiime2__demux__summarize" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Summarize counts per sample.</description> 14 <description>Summarize counts per sample.</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
15 <requirements> 18 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> 19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
17 </requirements> 20 </requirements>
18 <version_command>q2galaxy version demux</version_command> 21 <version_command>q2galaxy version demux</version_command>
19 <command detect_errors="exit_code">q2galaxy run demux summarize '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run demux summarize '$inputs'</command>
20 <configfiles> 23 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 25 </configfiles>
23 <inputs> 26 <inputs>
24 <param name="data" type="data" format="qza" label="data: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be summarized."> 27 <param name="data" type="data" format="qza" label="data: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be summarized.">
25 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
26 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> 30 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
27 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> 31 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
28 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
29 </options> 32 </options>
30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> 33 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
31 </param> 34 </param>
32 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 35 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
33 <param name="n" type="integer" value="10000" label="n: Int" help="[default: 10000] The number of sequences that should be selected at random for quality score plots. The quality plots will present the average positional qualities across all of the sequences selected. If input sequences are paired end, plots will be generated for both forward and reverse reads for the same `n` sequences."/> 36 <param name="n" type="integer" value="10000" label="n: Int" help="[default: 10000] The number of sequences that should be selected at random for quality score plots. The quality plots will present the average positional qualities across all of the sequences selected. If input sequences are paired end, plots will be generated for both forward and reverse reads for the same `n` sequences."/>