# HG changeset patch
# User q2d2
# Date 1769616840 0
# Node ID a6945b6636461de1737c9372207ae8b3f1ce01e1
# Parent  2e3f6ea63f90acfa164512828c09b46b735deecb
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 36ec48f8c55799a0c963733df13da30f19b1bdf3

diff -r 2e3f6ea63f90 -r a6945b663646 qiime2__demux__tabulate_read_counts.xml
--- a/qiime2__demux__tabulate_read_counts.xml	Sat Nov 01 17:11:13 2025 +0000
+++ b/qiime2__demux__tabulate_read_counts.xml	Wed Jan 28 16:14:00 2026 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2025, QIIME 2 development team.
+Copyright (c) 2026, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.10.0)
+    q2galaxy (version: 2026.1.0)
 for:
-    qiime2 (version: 2025.10.0)
+    qiime2 (version: 2026.1.0)
 -->
-<tool name="qiime2 demux tabulate-read-counts" id="qiime2__demux__tabulate_read_counts" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 demux tabulate-read-counts" id="qiime2__demux__tabulate_read_counts" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
     <description>Tabulate counts per sample</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
     </requirements>
     <version_command>q2galaxy version demux</version_command>
     <command detect_errors="exit_code">q2galaxy run demux tabulate_read_counts '$inputs'</command>
@@ -26,9 +26,9 @@
     <inputs>
         <param name="sequences" type="data" format="qza" label="sequences: List[SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]]" help="[required]  One or more collections of demultiplexed sequences." multiple="true">
             <options options_filter_attribute="metadata.semantic_type">
-                <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
+                <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
-                <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
+                <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
             </options>
         </param>
     </inputs>
diff -r 2e3f6ea63f90 -r a6945b663646 test-data/emp_single.test0.sequences.qza
Binary file test-data/emp_single.test0.sequences.qza has changed
diff -r 2e3f6ea63f90 -r a6945b663646 test-data/summarize.test0.demux.qza
Binary file test-data/summarize.test0.demux.qza has changed