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comparison qiime2__diversity__adonis.xml @ 3:94a8478403ad draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 20:58:40 +0000
parents 82f9bc0feff3
children 472a46b5d416
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2:82f9bc0feff3 3:94a8478403ad
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 diversity adonis" id="qiime2__diversity__adonis" version="2023.5.1+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 diversity adonis" id="qiime2__diversity__adonis" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>adonis PERMANOVA test for beta group significance</description> 14 <description>adonis PERMANOVA test for beta group significance</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version diversity</version_command> 18 <version_command>q2galaxy version diversity</version_command>
19 <command detect_errors="exit_code">q2galaxy run diversity adonis '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run diversity adonis '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="distance_matrix" type="data" format="qza" label="distance_matrix: DistanceMatrix" help="[required] Matrix of distances between pairs of samples."> 24 <param name="distance_matrix" type="data" format="qza" label="distance_matrix: DistanceMatrix" help="[required] Matrix of distances between pairs of samples.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="DistanceMatrix"/> 26 <filter type="add_value" value="DistanceMatrix"/>
47 </sanitizer> 47 </sanitizer>
48 <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator> 48 <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
49 </param> 49 </param>
50 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 50 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
51 <param name="permutations" type="integer" min="1" value="999" label="permutations: Int % Range(1, None)" help="[default: 999] The number of permutations to be run when computing p-values."/> 51 <param name="permutations" type="integer" min="1" value="999" label="permutations: Int % Range(1, None)" help="[default: 999] The number of permutations to be run when computing p-values."/>
52 <param name="n_jobs" type="integer" min="1" value="1" label="n_jobs: Int % Range(1, None)" help="[default: 1] Number of parallel processes to run."/>
53 </section> 52 </section>
54 </inputs> 53 </inputs>
55 <outputs> 54 <outputs>
56 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> 55 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
57 </outputs> 56 </outputs>