Mercurial > repos > q2d2 > qiime2__diversity__beta_correlation
comparison qiime2__diversity__beta_correlation.xml @ 4:26b99164f629 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit c7e80dcda727ce63b42aa8a946e9330310929797
| author | q2d2 |
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| date | Mon, 03 Jun 2024 23:18:33 +0000 |
| parents | f7e81c151e17 |
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| 3:f7e81c151e17 | 4:26b99164f629 |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2024.2.1) | 9 q2galaxy (version: 2024.5.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2024.2.0) | 11 qiime2 (version: 2024.5.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 diversity beta-correlation" id="qiime2__diversity__beta_correlation" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 diversity beta-correlation" id="qiime2__diversity__beta_correlation" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Beta diversity correlation</description> | 14 <description>Beta diversity correlation</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> | 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version diversity</version_command> | 18 <version_command>q2galaxy version diversity</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run diversity beta_correlation '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run diversity beta_correlation '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 50 <option value="spearman" selected="true">spearman</option> | 50 <option value="spearman" selected="true">spearman</option> |
| 51 <option value="pearson">pearson</option> | 51 <option value="pearson">pearson</option> |
| 52 </param> | 52 </param> |
| 53 <param name="permutations" type="integer" min="0" value="999" label="permutations: Int % Range(0, None)" help="[default: 999] The number of permutations to be run when computing p-values. Supplying a value of zero will disable permutation testing and p-values will not be calculated (this results in *much* quicker execution time if p-values are not desired)."/> | 53 <param name="permutations" type="integer" min="0" value="999" label="permutations: Int % Range(0, None)" help="[default: 999] The number of permutations to be run when computing p-values. Supplying a value of zero will disable permutation testing and p-values will not be calculated (this results in *much* quicker execution time if p-values are not desired)."/> |
| 54 <param name="intersect_ids" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="intersect_ids: Bool" help="[default: No] If supplied, IDs that are not found in both distance matrices will be discarded before applying the Mantel test. Default behavior is to error on any mismatched IDs."/> | 54 <param name="intersect_ids" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="intersect_ids: Bool" help="[default: No] If supplied, IDs that are not found in both distance matrices will be discarded before applying the Mantel test. Default behavior is to error on any mismatched IDs."/> |
| 55 <param name="label1" type="text" value="Metadata" label="label1: Str" help="[default: 'Metadata'] Label for `distance_matrix` in the output visualization."> | 55 <param name="label1" type="text" value="Distance Matrix" label="label1: Str" help="[default: 'Distance Matrix'] Label for `distance_matrix` in the output visualization."> |
| 56 <sanitizer> | 56 <sanitizer> |
| 57 <valid initial="string.printable"/> | 57 <valid initial="string.printable"/> |
| 58 </sanitizer> | 58 </sanitizer> |
| 59 </param> | 59 </param> |
| 60 <param name="label2" type="text" value="Distance Matrix" label="label2: Str" help="[default: 'Distance Matrix'] Label for `metadata_distance_matrix` in the output visualization."> | 60 <param name="label2" type="text" value="Metadata" label="label2: Str" help="[default: 'Metadata'] Label for `metadata_distance_matrix` in the output visualization."> |
| 61 <sanitizer> | 61 <sanitizer> |
| 62 <valid initial="string.printable"/> | 62 <valid initial="string.printable"/> |
| 63 </sanitizer> | 63 </sanitizer> |
| 64 </param> | 64 </param> |
| 65 </section> | 65 </section> |