# HG changeset patch # User q2d2 # Date 1661801426 0 # Node ID db10f8dee85a060591e3dec1d79cc9f08e6649fb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 diff -r 000000000000 -r db10f8dee85a qiime2__diversity__beta_rarefaction.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__diversity__beta_rarefaction.xml Mon Aug 29 19:30:26 2022 +0000 @@ -0,0 +1,156 @@ + + + + + Beta diversity rarefaction + + quay.io/qiime2/core:2022.8 + + q2galaxy version diversity + q2galaxy run diversity beta_rarefaction '$inputs' + + + + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]'] + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + value != '__q2galaxy__::literal::None' + + + + + + value != '__q2galaxy__::literal::None' + + + + + + + + + + + + + + + + +
+ + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]'] + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + + + +QIIME 2: diversity beta-rarefaction +=================================== +Beta diversity rarefaction + + +Outputs: +-------- +:visualization.qzv: <no description> + +| + +Description: +------------ +Repeatedly rarefy a feature table to compare beta diversity results within a given rarefaction depth. + +For a given beta diversity metric, this visualizer will provide: an Emperor jackknifed PCoA plot, samples clustered by UPGMA or neighbor joining with support calculation, and a heatmap showing the correlation between rarefaction trials of that beta diversity metric. + + +| + + + + @article{cite1, + author = {Mantel, Nathan}, + journal = {Cancer research}, + number = {2 Part 1}, + pages = {209--220}, + publisher = {AACR}, + title = {The detection of disease clustering and a generalized regression approach}, + volume = {27}, + year = {1967} +} + + https://doi.org/10.1098/rspl.1895.0041 + https://doi.org/10.2307/1422689 + 10.1038/s41587-019-0209-9 + +
diff -r 000000000000 -r db10f8dee85a test-data/.gitkeep