--- a/qiime2__diversity_lib__beta_passthrough.xml Thu Apr 25 21:03:38 2024 +0000
+++ b/qiime2__diversity_lib__beta_passthrough.xml Mon Jun 03 23:20:43 2024 +0000
@@ -6,14 +6,14 @@
-->
<!--
This tool was automatically generated by:
- q2galaxy (version: 2024.2.1)
+ q2galaxy (version: 2024.5.0)
for:
- qiime2 (version: 2024.2.0)
+ qiime2 (version: 2024.5.0)
-->
-<tool name="qiime2 diversity-lib beta-passthrough" id="qiime2__diversity_lib__beta_passthrough" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity-lib beta-passthrough" id="qiime2__diversity_lib__beta_passthrough" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
<description>Beta Passthrough (non-phylogenetic)</description>
<requirements>
- <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
+ <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
</requirements>
<version_command>q2galaxy version diversity_lib</version_command>
<command detect_errors="exit_code">q2galaxy run diversity_lib beta_passthrough '$inputs'</command>
@@ -27,7 +27,7 @@
</options>
<validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
</param>
- <param name="metric" type="select" label="metric: Str % Choices('aitchison', 'canberra', 'canberra_adkins', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jensenshannon', 'kulsinski', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')">
+ <param name="metric" type="select" label="metric: Str % Choices('aitchison', 'canberra', 'canberra_adkins', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jensenshannon', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')">
<option value="__q2galaxy__::literal::None">Selection required</option>
<option value="aitchison">aitchison</option>
<option value="canberra">canberra</option>
@@ -40,7 +40,6 @@
<option value="euclidean">euclidean</option>
<option value="hamming">hamming</option>
<option value="jensenshannon">jensenshannon</option>
- <option value="kulsinski">kulsinski</option>
<option value="matching">matching</option>
<option value="minkowski">minkowski</option>
<option value="rogerstanimoto">rogerstanimoto</option>
@@ -73,7 +72,7 @@
</test>
<test>
<param name="table" value="beta_passthrough.test1.feature-table.qza" ftype="qza"/>
- <param name="metric" value="kulsinski"/>
+ <param name="metric" value="euclidean"/>
<output name="distance_matrix" ftype="qza">
<assert_contents>
<has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
@@ -148,7 +147,7 @@
*************************************************************
Using the ``qiime2 diversity-lib beta-passthrough`` tool:
#. Set *"table"* to ``#: feature-table.qza``
- #. Set *"metric"* to ``kulsinski``
+ #. Set *"metric"* to ``euclidean``
#. Press the ``Execute`` button.
Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
@@ -161,7 +160,7 @@
* - History Name
- *"Name"* to set (be sure to press ``Save``)
* - ``#: qiime2 diversity-lib beta-passthrough [...] : distance_matrix.qza``
- - ``kulsinski-dm.qza``
+ - ``euclidean-dm.qza``
use 'auto' to run on all of host system's available CPU cores
*************************************************************
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