# HG changeset patch
# User q2d2
# Date 1746470928 0
# Node ID 58c46e32cff6f2d0a8cd551a500f98990e266edc
# Parent df2902af58c1b93ba55cdaf825a805c7ceace617
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit b1fccfb38b4873cd4699743033449014a2978e7d
diff -r df2902af58c1 -r 58c46e32cff6 qiime2__diversity_lib__jaccard.xml
--- a/qiime2__diversity_lib__jaccard.xml Wed Oct 30 19:45:08 2024 +0000
+++ b/qiime2__diversity_lib__jaccard.xml Mon May 05 18:48:48 2025 +0000
@@ -1,22 +1,22 @@
<?xml version='1.0' encoding='utf-8'?>
<!--
-Copyright (c) 2024, QIIME 2 development team.
+Copyright (c) 2025, QIIME 2 development team.
Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
- q2galaxy (version: 2024.10.0)
+ q2galaxy (version: 2025.4.0)
for:
- qiime2 (version: 2024.10.1)
+ qiime2 (version: 2025.4.0)
-->
-<tool name="qiime2 diversity-lib jaccard" id="qiime2__diversity_lib__jaccard" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity-lib jaccard" id="qiime2__diversity_lib__jaccard" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
<description>Jaccard Distance</description>
<xrefs>
<xref type="bio.tools">qiime2</xref>
</xrefs>
<requirements>
- <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+ <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
</requirements>
<version_command>q2galaxy version diversity_lib</version_command>
<command detect_errors="exit_code">q2galaxy run diversity_lib jaccard '$inputs'</command>
@@ -26,9 +26,9 @@
<inputs>
<param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which Jaccard distance should be computed.">
<options options_filter_attribute="metadata.semantic_type">
- <filter type="add_value" value="FeatureTable[Frequency]"/>
+ <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
<filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
- <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+ <filter type="add_value" value="FeatureTable[Frequency]"/>
</options>
<validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
</param>
diff -r df2902af58c1 -r 58c46e32cff6 test-data/alpha_passthrough.test0.feature-table.qza
Binary file test-data/alpha_passthrough.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_passthrough.test0.feature-table.qza
Binary file test-data/beta_passthrough.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_passthrough.test1.feature-table.qza
Binary file test-data/beta_passthrough.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_passthrough.test2.feature-table.qza
Binary file test-data/beta_passthrough.test2.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_passthrough.test3.feature-table.qza
Binary file test-data/beta_passthrough.test3.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza
Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test0.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test1.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test2.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test2.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test3.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test3.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test4.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test4.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test5.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test5.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test6.feature-table.qza
Binary file test-data/beta_phylogenetic_passthrough.test6.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza
Binary file test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/bray_curtis.test0.feature-table.qza
Binary file test-data/bray_curtis.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/bray_curtis.test1.feature-table.qza
Binary file test-data/bray_curtis.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/bray_curtis.test2.feature-table.qza
Binary file test-data/bray_curtis.test2.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/faith_pd.test0.feature-table.qza
Binary file test-data/faith_pd.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/faith_pd.test0.phylogeny.qza
Binary file test-data/faith_pd.test0.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/jaccard.test0.feature-table.qza
Binary file test-data/jaccard.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/jaccard.test1.feature-table.qza
Binary file test-data/jaccard.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/jaccard.test2.feature-table.qza
Binary file test-data/jaccard.test2.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/observed_features.test0.feature-table.qza
Binary file test-data/observed_features.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/pielou_evenness.test0.feature-table.qza
Binary file test-data/pielou_evenness.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/pielou_evenness.test1.feature-table.qza
Binary file test-data/pielou_evenness.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/shannon_entropy.test0.feature-table.qza
Binary file test-data/shannon_entropy.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/shannon_entropy.test1.feature-table.qza
Binary file test-data/shannon_entropy.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test0.feature-table.qza
Binary file test-data/unweighted_unifrac.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test0.phylogeny.qza
Binary file test-data/unweighted_unifrac.test0.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test1.feature-table.qza
Binary file test-data/unweighted_unifrac.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test1.phylogeny.qza
Binary file test-data/unweighted_unifrac.test1.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test2.feature-table.qza
Binary file test-data/unweighted_unifrac.test2.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test2.phylogeny.qza
Binary file test-data/unweighted_unifrac.test2.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test3.feature-table.qza
Binary file test-data/unweighted_unifrac.test3.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/unweighted_unifrac.test3.phylogeny.qza
Binary file test-data/unweighted_unifrac.test3.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test0.feature-table.qza
Binary file test-data/weighted_unifrac.test0.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test0.phylogeny.qza
Binary file test-data/weighted_unifrac.test0.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test1.feature-table.qza
Binary file test-data/weighted_unifrac.test1.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test1.phylogeny.qza
Binary file test-data/weighted_unifrac.test1.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test2.feature-table.qza
Binary file test-data/weighted_unifrac.test2.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test2.phylogeny.qza
Binary file test-data/weighted_unifrac.test2.phylogeny.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test3.feature-table.qza
Binary file test-data/weighted_unifrac.test3.feature-table.qza has changed
diff -r df2902af58c1 -r 58c46e32cff6 test-data/weighted_unifrac.test3.phylogeny.qza
Binary file test-data/weighted_unifrac.test3.phylogeny.qza has changed