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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit b1fccfb38b4873cd4699743033449014a2978e7d
author q2d2
date Mon, 05 May 2025 18:45:30 +0000
parents 89d7fabc1120
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5:89d7fabc1120 6:37e114ead80a
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2024, QIIME 2 development team. 3 Copyright (c) 2025, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.10.0) 9 q2galaxy (version: 2025.4.0)
10 for: 10 for:
11 qiime2 (version: 2024.10.1) 11 qiime2 (version: 2025.4.0)
12 --> 12 -->
13 <tool name="qiime2 diversity-lib observed-features" id="qiime2__diversity_lib__observed_features" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 diversity-lib observed-features" id="qiime2__diversity_lib__observed_features" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
14 <description>Observed Features</description> 14 <description>Observed Features</description>
15 <xrefs> 15 <xrefs>
16 <xref type="bio.tools">qiime2</xref> 16 <xref type="bio.tools">qiime2</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container> 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
20 </requirements> 20 </requirements>
21 <version_command>q2galaxy version diversity_lib</version_command> 21 <version_command>q2galaxy version diversity_lib</version_command>
22 <command detect_errors="exit_code">q2galaxy run diversity_lib observed_features '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run diversity_lib observed_features '$inputs'</command>
23 <configfiles> 23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
25 </configfiles> 25 </configfiles>
26 <inputs> 26 <inputs>
27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence."> 27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence.">
28 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
30 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
29 <filter type="add_value" value="FeatureTable[Frequency]"/> 31 <filter type="add_value" value="FeatureTable[Frequency]"/>
30 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
31 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
32 </options> 32 </options>
33 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> 33 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
34 </param> 34 </param>
35 </inputs> 35 </inputs>
36 <outputs> 36 <outputs>