# HG changeset patch # User q2d2 # Date 1661802201 0 # Node ID 99b04636e7b568210b14f409a89d93334fc3559a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 diff -r 000000000000 -r 99b04636e7b5 qiime2__diversity_lib__pielou_evenness.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__diversity_lib__pielou_evenness.xml Mon Aug 29 19:43:21 2022 +0000 @@ -0,0 +1,128 @@ + + + + + Pielou's Evenness + + quay.io/qiime2/core:2022.8 + + q2galaxy version diversity_lib + q2galaxy run diversity_lib pielou_evenness '$inputs' + + + + + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]'] + +
+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + +QIIME 2: diversity-lib pielou-evenness +====================================== +Pielou's Evenness + + +Outputs: +-------- +:vector.qza: Vector containing per-sample values for Pielou's Evenness. + +| + +Description: +------------ +Compute Pielou's Evenness for each sample in a feature table + +Examples: +--------- + +basic +***** +Using the ``qiime2 diversity-lib pielou-evenness`` tool: + #. Set *"table"* to ``#: feature-table.qza`` + #. Press the ``Execute`` button. + +Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows: + (Renaming is optional, but it will make any subsequent steps easier to complete.) + + .. list-table:: + :align: left + :header-rows: 1 + + * - History Name + - *"Name"* to set (be sure to press ``Save``) + * - ``#: qiime2 diversity-lib pielou-evenness [...] : vector.qza`` + - ``pielou-vector.qza`` + +dropping undefined samples +************************** +Using the ``qiime2 diversity-lib pielou-evenness`` tool: + #. Set *"table"* to ``#: feature-table.qza`` + #. Expand the ``additional options`` section + + - Set *"drop_undefined_samples"* to ``Yes`` + + #. Press the ``Execute`` button. + +Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows: + (Renaming is optional, but it will make any subsequent steps easier to complete.) + + .. list-table:: + :align: left + :header-rows: 1 + + * - History Name + - *"Name"* to set (be sure to press ``Save``) + * - ``#: qiime2 diversity-lib pielou-evenness [...] : vector.qza`` + - ``pielou-vector.qza`` + + +| + + + + 10.1016/0022-5193(66)90013-0 + 10.1038/s41587-019-0209-9 + +
diff -r 000000000000 -r 99b04636e7b5 test-data/alpha_passthrough.test0.feature-table.qza Binary file test-data/alpha_passthrough.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_passthrough.test0.feature-table.qza Binary file test-data/beta_passthrough.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_passthrough.test1.feature-table.qza Binary file test-data/beta_passthrough.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_passthrough.test2.feature-table.qza Binary file test-data/beta_passthrough.test2.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_passthrough.test3.feature-table.qza Binary file test-data/beta_passthrough.test3.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test0.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test1.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test2.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test2.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test3.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test3.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test4.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test4.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test5.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test5.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test6.feature-table.qza Binary file test-data/beta_phylogenetic_passthrough.test6.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza Binary file test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/bray_curtis.test0.feature-table.qza Binary file test-data/bray_curtis.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/bray_curtis.test1.feature-table.qza Binary file test-data/bray_curtis.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/bray_curtis.test2.feature-table.qza Binary file test-data/bray_curtis.test2.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/faith_pd.test0.feature-table.qza Binary file test-data/faith_pd.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/faith_pd.test0.phylogeny.qza Binary file test-data/faith_pd.test0.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/jaccard.test0.feature-table.qza Binary file test-data/jaccard.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/jaccard.test1.feature-table.qza Binary file test-data/jaccard.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/jaccard.test2.feature-table.qza Binary file test-data/jaccard.test2.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/observed_features.test0.feature-table.qza Binary file test-data/observed_features.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/pielou_evenness.test0.feature-table.qza Binary file test-data/pielou_evenness.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/pielou_evenness.test1.feature-table.qza Binary file test-data/pielou_evenness.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/shannon_entropy.test0.feature-table.qza Binary file test-data/shannon_entropy.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/shannon_entropy.test1.feature-table.qza Binary file test-data/shannon_entropy.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test0.feature-table.qza Binary file test-data/unweighted_unifrac.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test0.phylogeny.qza Binary file test-data/unweighted_unifrac.test0.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test1.feature-table.qza Binary file test-data/unweighted_unifrac.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test1.phylogeny.qza Binary file test-data/unweighted_unifrac.test1.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test2.feature-table.qza Binary file test-data/unweighted_unifrac.test2.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test2.phylogeny.qza Binary file test-data/unweighted_unifrac.test2.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test3.feature-table.qza Binary file test-data/unweighted_unifrac.test3.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/unweighted_unifrac.test3.phylogeny.qza Binary file test-data/unweighted_unifrac.test3.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test0.feature-table.qza Binary file test-data/weighted_unifrac.test0.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test0.phylogeny.qza Binary file test-data/weighted_unifrac.test0.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test1.feature-table.qza Binary file test-data/weighted_unifrac.test1.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test1.phylogeny.qza Binary file test-data/weighted_unifrac.test1.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test2.feature-table.qza Binary file test-data/weighted_unifrac.test2.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test2.phylogeny.qza Binary file test-data/weighted_unifrac.test2.phylogeny.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test3.feature-table.qza Binary file test-data/weighted_unifrac.test3.feature-table.qza has changed diff -r 000000000000 -r 99b04636e7b5 test-data/weighted_unifrac.test3.phylogeny.qza Binary file test-data/weighted_unifrac.test3.phylogeny.qza has changed