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comparison qiime2__diversity_lib__shannon_entropy.xml @ 5:b2ccb5709bed draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:44:28 +0000
parents 7f8e31cd33ed
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4:7f8e31cd33ed 5:b2ccb5709bed
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.5.0) 9 q2galaxy (version: 2024.10.0)
10 for: 10 for:
11 qiime2 (version: 2024.5.0) 11 qiime2 (version: 2024.10.1)
12 --> 12 -->
13 <tool name="qiime2 diversity-lib shannon-entropy" id="qiime2__diversity_lib__shannon_entropy" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 diversity-lib shannon-entropy" id="qiime2__diversity_lib__shannon_entropy" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Shannon's Entropy</description> 14 <description>Shannon's Entropy</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
15 <requirements> 18 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> 19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
17 </requirements> 20 </requirements>
18 <version_command>q2galaxy version diversity_lib</version_command> 21 <version_command>q2galaxy version diversity_lib</version_command>
19 <command detect_errors="exit_code">q2galaxy run diversity_lib shannon_entropy '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run diversity_lib shannon_entropy '$inputs'</command>
20 <configfiles> 23 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 25 </configfiles>
23 <inputs> 26 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency]" help="[required] The feature table containing the samples for which Shannon's Entropy should be computed."> 27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency]" help="[required] The feature table containing the samples for which Shannon's Entropy should be computed.">
25 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="FeatureTable[Frequency]"/>
26 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> 30 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
27 <filter type="add_value" value="FeatureTable[Frequency]"/>
28 </options> 31 </options>
29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]']</validator> 32 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]']</validator>
30 </param> 33 </param>
31 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 34 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
32 <param name="drop_undefined_samples" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="drop_undefined_samples: Bool" help="[default: No] Samples with no observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector."/> 35 <param name="drop_undefined_samples" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="drop_undefined_samples: Bool" help="[default: No] Samples with no observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector."/>