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comparison qiime2__emperor__procrustes_plot.xml @ 1:bd0dbc487394 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__emperor commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author q2d2
date Fri, 13 Jan 2023 22:50:39 +0000
parents 7c4129b3c5ea
children ec2a0e6d9baf
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0:7c4129b3c5ea 1:bd0dbc487394
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2022, QIIME 2 development team. 3 Copyright (c) 2023, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2022.8.1) 9 q2galaxy (version: 2022.11.1)
10 for: 10 for:
11 qiime2 (version: 2022.8.1) 11 qiime2 (version: 2022.11.1)
12 --> 12 -->
13 <tool name="qiime2 emperor procrustes-plot" id="qiime2__emperor__procrustes_plot" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 emperor procrustes-plot" id="qiime2__emperor__procrustes_plot" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
14 <description>Visualize and Interact with a procrustes plot</description> 14 <description>Visualize and Interact with a procrustes plot</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.8</container> 16 <container type="docker">quay.io/qiime2/core:2022.11</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version emperor</version_command> 18 <version_command>q2galaxy version emperor</version_command>
19 <command detect_errors="aggressive">q2galaxy run emperor procrustes_plot '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run emperor procrustes_plot '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="paths"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="reference_pcoa" type="data" format="qza" label="reference_pcoa: PCoAResults" help="[required] The reference ordination matrix to be plotted."> 24 <param name="reference_pcoa" type="data" format="qza" label="reference_pcoa: PCoAResults" help="[required] The reference ordination matrix to be plotted.">
66 </section> 66 </section>
67 </inputs> 67 </inputs>
68 <outputs> 68 <outputs>
69 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> 69 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
70 </outputs> 70 </outputs>
71 <tests/> 71 <tests>
72 <test>
73 <param name="reference_pcoa" value="procrustes_plot.test0.bc-pcoa-result.qza" ftype="qza"/>
74 <param name="other_pcoa" value="procrustes_plot.test0.unw-pcoa-result.qza" ftype="qza"/>
75 <repeat name="metadata">
76 <conditional name="__q2galaxy__GUI__conditional__metadata__">
77 <param name="type" value="tsv"/>
78 <param name="source" value="procrustes_plot.test0.sample-metadata.tsv" ftype="qiime2.tabular"/>
79 </conditional>
80 </repeat>
81 <output name="visualization" ftype="qzv">
82 <assert_contents>
83 <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
84 <has_line_matching expression="type: Visualization"/>
85 </has_archive_member>
86 </assert_contents>
87 </output>
88 </test>
89 </tests>
72 <help> 90 <help>
73 QIIME 2: emperor procrustes-plot 91 QIIME 2: emperor procrustes-plot
74 ================================ 92 ================================
75 Visualize and Interact with a procrustes plot 93 Visualize and Interact with a procrustes plot
76 94
83 101
84 Description: 102 Description:
85 ------------ 103 ------------
86 Plot two procrustes-fitted matrices 104 Plot two procrustes-fitted matrices
87 105
106 Examples:
107 ---------
108
109 procrustes_plot
110 ***************
111 Using the ``qiime2 emperor procrustes-plot`` tool:
112 #. Set *"reference_pcoa"* to ``#: bc-pcoa-result.qza``
113 #. Set *"other_pcoa"* to ``#: unw-pcoa-result.qza``
114 #. For *"metadata"*:
115
116 - Perform the following steps.
117
118 #. Leave as ``Metadata from TSV``
119 #. Set *"Metadata Source"* to ``sample-metadata.tsv``
120
121
122 #. Press the ``Execute`` button.
123
124 Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
125 (Renaming is optional, but it will make any subsequent steps easier to complete.)
126
127 .. list-table::
128 :align: left
129 :header-rows: 1
130
131 * - History Name
132 - *"Name"* to set (be sure to press ``Save``)
133 * - ``#: qiime2 emperor procrustes-plot [...] : visualization.qzv``
134 - ``plot.qzv``
135
88 136
89 | 137 |
90 138
91 </help> 139 </help>
92 <citations> 140 <citations>