# HG changeset patch
# User q2d2
# Date 1714079152 0
# Node ID 06f77767806ae87c4d8e1870860552a8bbb1f559
# Parent  f82f2dbf0c048ec91eff6108c046c9ca4b585017
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r f82f2dbf0c04 -r 06f77767806a qiime2__feature_classifier__classify_consensus_vsearch.xml
--- a/qiime2__feature_classifier__classify_consensus_vsearch.xml	Thu Jun 08 19:43:43 2023 +0000
+++ b/qiime2__feature_classifier__classify_consensus_vsearch.xml	Thu Apr 25 21:05:52 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 feature-classifier classify-consensus-vsearch" id="qiime2__feature_classifier__classify_consensus_vsearch" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 feature-classifier classify-consensus-vsearch" id="qiime2__feature_classifier__classify_consensus_vsearch" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>VSEARCH-based consensus taxonomy classifier</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version feature_classifier</version_command>
     <command detect_errors="exit_code">q2galaxy run feature_classifier classify_consensus_vsearch '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="query" type="data" format="qza" label="query: FeatureData[Sequence]" help="[required]  Query Sequences.">
@@ -86,7 +86,6 @@
             </conditional>
             <param name="output_no_hits" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="output_no_hits: Bool" help="[default: Yes]  Report both matching and non-matching queries. WARNING: always use the default setting for this option unless if you know what you are doing! If you set this option to False, your sequences and feature table will need to be filtered to exclude unclassified sequences, otherwise you may run into errors downstream from missing feature IDs."/>
             <param name="weak_id" type="float" min="0.0" max="1.0" value="0.0" label="weak_id: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.0]  Show hits with percentage of identity of at least N, without terminating the search. A normal search stops as soon as enough hits are found (as defined by maxaccepts, maxrejects, and perc_identity). As weak_id reports weak hits that are not deduced from maxaccepts, high perc_identity values can be used, hence preserving both speed and sensitivity. Logically, weak_id must be smaller than the value indicated by perc_identity, otherwise this option will be ignored."/>
-            <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1]  Number of threads to use for job parallelization."/>
             <param name="min_consensus" type="float" min="0.500001" max="1.0" value="0.51" label="min_consensus: Float % Range(0.5, 1.0, inclusive_start=False, inclusive_end=True)" help="[default: 0.51]  Minimum fraction of assignments must match top hit to be accepted as consensus assignment."/>
             <param name="unassignable_label" type="text" value="Unassigned" label="unassignable_label: Str" help="[default: 'Unassigned']  Annotation given to sequences without any hits.">
                 <sanitizer>