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comparison qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml @ 3:9d30ef1580f6 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:05:30 +0000
parents abdf08c37b16
children 9162ded52c6a
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2:abdf08c37b16 3:9d30ef1580f6
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 feature-classifier classify-hybrid-vsearch-sklearn" id="qiime2__feature_classifier__classify_hybrid_vsearch_sklearn" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-classifier classify-hybrid-vsearch-sklearn" id="qiime2__feature_classifier__classify_hybrid_vsearch_sklearn" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>ALPHA Hybrid classifier: VSEARCH exact match + sklearn classifier</description> 14 <description>ALPHA Hybrid classifier: VSEARCH exact match + sklearn classifier</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version feature_classifier</version_command> 18 <version_command>q2galaxy version feature_classifier</version_command>
19 <command detect_errors="exit_code">q2galaxy run feature_classifier classify_hybrid_vsearch_sklearn '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run feature_classifier classify_hybrid_vsearch_sklearn '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="query" type="data" format="qza" label="query: FeatureData[Sequence]" help="[required] Query Sequences."> 24 <param name="query" type="data" format="qza" label="query: FeatureData[Sequence]" help="[required] Query Sequences.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureData[Sequence]"/> 26 <filter type="add_value" value="FeatureData[Sequence]"/>
116 <param name="read_orientation" type="select" label="read_orientation: Str % Choices('same', 'reverse-complement', 'auto')" display="radio"> 116 <param name="read_orientation" type="select" label="read_orientation: Str % Choices('same', 'reverse-complement', 'auto')" display="radio">
117 <option value="same">same</option> 117 <option value="same">same</option>
118 <option value="reverse-complement">reverse-complement</option> 118 <option value="reverse-complement">reverse-complement</option>
119 <option value="auto" selected="true">auto</option> 119 <option value="auto" selected="true">auto</option>
120 </param> 120 </param>
121 <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1] Number of threads to use for job parallelization."/>
122 <param name="prefilter" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="prefilter: Bool" help="[default: Yes] Toggle positive filter of query sequences on or off."/> 121 <param name="prefilter" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="prefilter: Bool" help="[default: Yes] Toggle positive filter of query sequences on or off."/>
123 <param name="sample_size" type="integer" min="1" value="1000" label="sample_size: Int % Range(1, None)" help="[default: 1000] Randomly extract the given number of sequences from the reference database to use for prefiltering. This parameter is ignored if `prefilter` is disabled."/> 122 <param name="sample_size" type="integer" min="1" value="1000" label="sample_size: Int % Range(1, None)" help="[default: 1000] Randomly extract the given number of sequences from the reference database to use for prefiltering. This parameter is ignored if `prefilter` is disabled."/>
124 <param name="randseed" type="integer" min="0" value="0" label="randseed: Int % Range(0, None)" help="[default: 0] Use integer as a seed for the pseudo-random generator used during prefiltering. A given seed always produces the same output, which is useful for replicability. Set to 0 to use a pseudo-random seed. This parameter is ignored if `prefilter` is disabled."/> 123 <param name="randseed" type="integer" min="0" value="0" label="randseed: Int % Range(0, None)" help="[default: 0] Use integer as a seed for the pseudo-random generator used during prefiltering. A given seed always produces the same output, which is useful for replicability. Set to 0 to use a pseudo-random seed. This parameter is ignored if `prefilter` is disabled."/>
125 </section> 124 </section>
126 </inputs> 125 </inputs>