Mercurial > repos > q2d2 > qiime2__feature_classifier__classify_sklearn

changeset 3:863bb205e6d1 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:06:11 +0000
parents 8aa82af30760
children d6632af373ab
files qiime2__feature_classifier__classify_sklearn.xml
diffstat 1 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__feature_classifier__classify_sklearn.xml	Thu Jun 08 19:43:29 2023 +0000
+++ b/qiime2__feature_classifier__classify_sklearn.xml	Thu Apr 25 21:06:11 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 feature-classifier classify-sklearn" id="qiime2__feature_classifier__classify_sklearn" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 feature-classifier classify-sklearn" id="qiime2__feature_classifier__classify_sklearn" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Pre-fitted sklearn-based taxonomy classifier</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version feature_classifier</version_command>
     <command detect_errors="exit_code">q2galaxy run feature_classifier classify_sklearn '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="reads" type="data" format="qza" label="reads: FeatureData[Sequence]" help="[required]  The feature data to be classified.">
@@ -46,7 +46,6 @@
                     <param name="reads_per_batch" type="integer" min="1" value="" label="reads_per_batch: Int % Range(1, None)" help="[required]  Number of reads to process in each batch. If &quot;auto&quot;, this parameter is autoscaled to min( number of query sequences / n_jobs, 20000)."/>
                 </when>
             </conditional>
-            <param name="n_jobs" type="integer" value="1" label="n_jobs: Int" help="[default: 1]  The maximum number of concurrently worker processes. If -1 all CPUs are used. If 1 is given, no parallel computing code is used at all, which is useful for debugging. For n_jobs below -1, (n_cpus + 1 + n_jobs) are used. Thus for n_jobs = -2, all CPUs but one are used."/>
             <param name="pre_dispatch" type="text" value="2*n_jobs" label="pre_dispatch: Str" help="[default: '2*n_jobs']  &quot;all&quot; or expression, as in &quot;3*n_jobs&quot;. The number of batches (of tasks) to be pre-dispatched.">
                 <sanitizer>
                     <valid initial="string.printable"/>