Mercurial > repos > q2d2 > qiime2__feature_table__filter_features
diff qiime2__feature_table__filter_features.xml @ 1:a63fa31b8367 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author | q2d2 |
---|---|
date | Fri, 13 Jan 2023 22:54:03 +0000 |
parents | 5585d004e609 |
children | b2df7f8e4a07 |
line wrap: on
line diff
--- a/qiime2__feature_table__filter_features.xml Mon Aug 29 20:00:00 2022 +0000 +++ b/qiime2__feature_table__filter_features.xml Fri Jan 13 22:54:03 2023 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2022, QIIME 2 development team. +Copyright (c) 2023, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.8.1) + q2galaxy (version: 2022.11.1) for: - qiime2 (version: 2022.8.1) + qiime2 (version: 2022.11.1) --> -<tool name="qiime2 feature-table filter-features" id="qiime2__feature_table__filter_features" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 feature-table filter-features" id="qiime2__feature_table__filter_features" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> <description>Filter features from table</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.8</container> + <container type="docker">quay.io/qiime2/core:2022.11</container> </requirements> <version_command>q2galaxy version feature_table</version_command> - <command detect_errors="aggressive">q2galaxy run feature_table filter_features '$inputs'</command> + <command detect_errors="exit_code">q2galaxy run feature_table filter_features '$inputs'</command> <configfiles> <inputs name="inputs" data_style="paths"/> </configfiles> @@ -69,7 +69,19 @@ <outputs> <data name="filtered_table" format="qza" label="${tool.name} on ${on_string}: filtered_table.qza" from_work_dir="filtered_table.qza"/> </outputs> - <tests/> + <tests> + <test> + <param name="table" value="filter_features.test0.feature-table.qza" ftype="qza"/> + <param name="min_samples" value="2"/> + <output name="filtered_table" ftype="qza"> + <assert_contents> + <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml"> + <has_line_matching expression="type: FeatureTable\[Frequency\]"/> + </has_archive_member> + </assert_contents> + </output> + </test> + </tests> <help> QIIME 2: feature-table filter-features ====================================== @@ -86,6 +98,20 @@ ------------ Filter features from table based on frequency and/or metadata. Any samples with a frequency of zero after feature filtering will also be removed. See the filtering tutorial on https://docs.qiime2.org for additional details. +Examples: +--------- + +filter_features_min_samples +*************************** +Using the ``qiime2 feature-table filter-features`` tool: + #. Set *"table"* to ``#: feature-table.qza`` + #. Expand the ``additional options`` section + + - Set *"min_samples"* to ``2`` + + #. Press the ``Execute`` button. + + |