Mercurial > repos > q2d2 > qiime2__feature_table__filter_samples

comparison qiime2__feature_table__filter_samples.xml @ 4:40647f5aa13b draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit c7e80dcda727ce63b42aa8a946e9330310929797
author q2d2
date Mon, 03 Jun 2024 23:24:54 +0000
parents 4a129fe72b67
children
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3:4a129fe72b67 4:40647f5aa13b
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.2.1) 9 q2galaxy (version: 2024.5.0)
10 for: 10 for:
11 qiime2 (version: 2024.2.0) 11 qiime2 (version: 2024.5.0)
12 --> 12 -->
13 <tool name="qiime2 feature-table filter-samples" id="qiime2__feature_table__filter_samples" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-table filter-samples" id="qiime2__feature_table__filter_samples" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
14 <description>Filter samples from table</description> 14 <description>Filter samples from table</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version feature_table</version_command> 18 <version_command>q2galaxy version feature_table</version_command>
19 <command detect_errors="exit_code">q2galaxy run feature_table filter_samples '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run feature_table filter_samples '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]" help="[required] The feature table from which samples should be filtered."> 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]" help="[required] The feature table from which samples should be filtered.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[Composition]"/> 26 <filter type="add_value" value="FeatureTable[Composition]"/>
27 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
28 <filter type="add_value" value="FeatureTable[Frequency]"/> 27 <filter type="add_value" value="FeatureTable[Frequency]"/>
29 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> 28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
29 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
30 </options> 30 </options>
31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> 31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
32 </param> 32 </param>
33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
34 <param name="min_frequency" type="integer" value="0" label="min_frequency: Int" help="[default: 0] The minimum total frequency that a sample must have to be retained."/> 34 <param name="min_frequency" type="integer" value="0" label="min_frequency: Int" help="[default: 0] The minimum total frequency that a sample must have to be retained."/>