# HG changeset patch
# User q2d2
# Date 1714079392 0
# Node ID 4e61dddfe0b5f84df872b62a31b4c9d32764dd1e
# Parent  fd3798589de0dc649690d83f529e1672b433c5a9
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r fd3798589de0 -r 4e61dddfe0b5 qiime2__feature_table__filter_seqs.xml
--- a/qiime2__feature_table__filter_seqs.xml	Thu Jun 08 19:44:50 2023 +0000
+++ b/qiime2__feature_table__filter_seqs.xml	Thu Apr 25 21:09:52 2024 +0000
@@ -1,30 +1,30 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 feature-table filter-seqs" id="qiime2__feature_table__filter_seqs" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 feature-table filter-seqs" id="qiime2__feature_table__filter_seqs" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Filter features from sequences</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version feature_table</version_command>
     <command detect_errors="exit_code">q2galaxy run feature_table filter_seqs '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="data" type="data" format="qza" label="data: FeatureData[Sequence¹ | AlignedSequence²]" help="[required]  The sequences from which features should be filtered.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureData[AlignedSequence]"/>
                 <filter type="add_value" value="FeatureData[Sequence]"/>
-                <filter type="add_value" value="FeatureData[AlignedSequence]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator>
         </param>
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_features.test0.feature-table.qza
Binary file test-data/filter_features.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_features_conditionally.test0.feature-table.qza
Binary file test-data/filter_features_conditionally.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test0.feature-table.qza
Binary file test-data/filter_samples.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test1.feature-table.qza
Binary file test-data/filter_samples.test1.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test2.feature-table.qza
Binary file test-data/filter_samples.test2.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test3.feature-table.qza
Binary file test-data/filter_samples.test3.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test4.feature-table.qza
Binary file test-data/filter_samples.test4.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test5.feature-table.qza
Binary file test-data/filter_samples.test5.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/filter_samples.test6.feature-table.qza
Binary file test-data/filter_samples.test6.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/group.test0.feature-table.qza
Binary file test-data/group.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge.test0.feature-table1.qza
Binary file test-data/merge.test0.feature-table1.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge.test0.feature-table2.qza
Binary file test-data/merge.test0.feature-table2.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge.test1.feature-table1.qza
Binary file test-data/merge.test1.feature-table1.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge.test1.feature-table2.qza
Binary file test-data/merge.test1.feature-table2.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge.test1.feature-table3.qza
Binary file test-data/merge.test1.feature-table3.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge_seqs.test0.seqs1.qza
Binary file test-data/merge_seqs.test0.seqs1.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge_seqs.test0.seqs2.qza
Binary file test-data/merge_seqs.test0.seqs2.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge_taxa.test0.tax1.qza
Binary file test-data/merge_taxa.test0.tax1.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/merge_taxa.test0.tax2.qza
Binary file test-data/merge_taxa.test0.tax2.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/summarize.test0.feature-table.qza
Binary file test-data/summarize.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/summarize_plus.test0.feature-table.qza
Binary file test-data/summarize_plus.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_feature_frequencies.test0.feature-table.qza
Binary file test-data/tabulate_feature_frequencies.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_sample_frequencies.test0.feature-table.qza
Binary file test-data/tabulate_sample_frequencies.test0.feature-table.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test0.rep-seqs.qza
Binary file test-data/tabulate_seqs.test0.rep-seqs.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test1.rep-seqs-single-taxon.qza
Binary file test-data/tabulate_seqs.test1.rep-seqs-single-taxon.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test1.single-taxonomy.qza
Binary file test-data/tabulate_seqs.test1.single-taxonomy.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test2.multi-taxonomy/.order
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tabulate_seqs.test2.multi-taxonomy/.order	Thu Apr 25 21:09:52 2024 +0000
@@ -0,0 +1,2 @@
+GG1
+GG2
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test2.multi-taxonomy/GG1.qza
Binary file test-data/tabulate_seqs.test2.multi-taxonomy/GG1.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test2.multi-taxonomy/GG2.qza
Binary file test-data/tabulate_seqs.test2.multi-taxonomy/GG2.qza has changed
diff -r fd3798589de0 -r 4e61dddfe0b5 test-data/tabulate_seqs.test2.rep-seqs-multi-taxon.qza
Binary file test-data/tabulate_seqs.test2.rep-seqs-multi-taxon.qza has changed