Mercurial > repos > q2d2 > qiime2__feature_table__heatmap

comparison qiime2__feature_table__heatmap.xml @ 7:56342a7ffc1c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0
author q2d2
date Tue, 15 Jul 2025 21:58:00 +0000
parents 84941f46775e
children
comparison
equal deleted inserted replaced
6:84941f46775e 7:56342a7ffc1c
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2025.4.0) 9 q2galaxy (version: 2025.7.0)
10 for: 10 for:
11 qiime2 (version: 2025.4.0) 11 qiime2 (version: 2025.7.0)
12 --> 12 -->
13 <tool name="qiime2 feature-table heatmap" id="qiime2__feature_table__heatmap" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-table heatmap" id="qiime2__feature_table__heatmap" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
14 <description>Generate a heatmap representation of a feature table</description> 14 <description>Generate a heatmap representation of a feature table</description>
15 <xrefs> 15 <xrefs>
16 <xref type="bio.tools">qiime2</xref> 16 <xref type="bio.tools">qiime2</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container> 19 <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
20 </requirements> 20 </requirements>
21 <version_command>q2galaxy version feature_table</version_command> 21 <version_command>q2galaxy version feature_table</version_command>
22 <command detect_errors="exit_code">q2galaxy run feature_table heatmap '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run feature_table heatmap '$inputs'</command>
23 <configfiles> 23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
25 </configfiles> 25 </configfiles>
26 <inputs> 26 <inputs>
27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] The feature table to visualize."> 27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[required] The feature table to visualize.">
28 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="FeatureTable[Composition]"/>
29 <filter type="add_value" value="FeatureTable[Frequency]"/> 30 <filter type="add_value" value="FeatureTable[Frequency]"/>
31 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
32 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
30 </options> 33 </options>
31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> 34 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
32 </param> 35 </param>
33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 36 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
34 <conditional name="sample_metadata"> 37 <conditional name="sample_metadata">
35 <param name="type" type="select" label="sample_metadata: MetadataColumn[Categorical]" help="[optional] Annotate the sample IDs with these sample metadata values. When metadata is present and `cluster`='feature', samples will be sorted by the metadata values."> 38 <param name="type" type="select" label="sample_metadata: MetadataColumn[Categorical]" help="[optional] Annotate the sample IDs with these sample metadata values. When metadata is present and `cluster`='feature', samples will be sorted by the metadata values.">
36 <option value="none" selected="true">None (default)</option> 39 <option value="none" selected="true">None (default)</option>