Mercurial > repos > q2d2 > qiime2__feature_table__merge

comparison qiime2__feature_table__merge.xml @ 3:6bad55f4a310 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:11:27 +0000
parents 4c2751c8cc0d
children 02074619b5e8
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2:4c2751c8cc0d 3:6bad55f4a310
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 feature-table merge" id="qiime2__feature_table__merge" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-table merge" id="qiime2__feature_table__merge" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>Combine multiple tables</description> 14 <description>Combine multiple tables</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version feature_table</version_command> 18 <version_command>q2galaxy version feature_table</version_command>
19 <command detect_errors="exit_code">q2galaxy run feature_table merge '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run feature_table merge '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="tables" type="data" format="qza" label="tables: List[FeatureTable[Frequency]¹ | FeatureTable[RelativeFrequency]²]" help="[required] The collection of feature tables to be merged." multiple="true"> 24 <param name="tables" type="data" format="qza" label="tables: List[FeatureTable[Frequency]¹ | FeatureTable[RelativeFrequency]² | FeatureTable[PresenceAbsence]³]" help="[required] The collection of feature tables to be merged." multiple="true">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[Frequency]"/> 26 <filter type="add_value" value="FeatureTable[Frequency]"/>
27 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> 27 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
28 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
28 </options> 29 </options>
29 </param> 30 </param>
30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 31 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
31 <param name="overlap_method" type="select" label="overlap_method: Str % Choices('average', 'error_on_overlapping_feature', 'error_on_overlapping_sample', 'sum')¹ | Str % Choices('average', 'error_on_overlapping_feature', 'error_on_overlapping_sample')²" help="[default: 'error_on_overlapping_sample'] Method for handling overlapping ids."> 32 <param name="overlap_method" type="select" label="overlap_method: Str % Choices('average', 'error_on_overlapping_feature', 'error_on_overlapping_sample', 'sum')¹ | Str % Choices('average', 'error_on_overlapping_feature', 'error_on_overlapping_sample')² | Str % Choices('error_on_overlapping_feature', 'error_on_overlapping_sample', 'union')³" help="[default: 'error_on_overlapping_sample'] Method for handling overlapping ids.">
32 <option value="average">average (Str)</option> 33 <option value="average">average (Str)</option>
33 <option value="error_on_overlapping_feature">error_on_overlapping_feature (Str)</option> 34 <option value="error_on_overlapping_feature">error_on_overlapping_feature (Str)</option>
34 <option value="error_on_overlapping_sample" selected="true">error_on_overlapping_sample (Str)</option> 35 <option value="error_on_overlapping_sample" selected="true">error_on_overlapping_sample (Str)</option>
35 <option value="sum">sum (Str)</option> 36 <option value="sum">sum (Str)</option>
37 <option value="union">union (Str)</option>
36 </param> 38 </param>
37 </section> 39 </section>
38 </inputs> 40 </inputs>
39 <outputs> 41 <outputs>
40 <data name="merged_table" format="qza" label="${tool.name} on ${on_string}: merged_table.qza" from_work_dir="merged_table.qza"/> 42 <data name="merged_table" format="qza" label="${tool.name} on ${on_string}: merged_table.qza" from_work_dir="merged_table.qza"/>