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comparison qiime2__feature_table__merge_seqs.xml @ 1:b46e5d243a98 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author q2d2
date Fri, 13 Jan 2023 22:53:19 +0000
parents f9e787a0cb5e
children 9b95556df0f4
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0:f9e787a0cb5e 1:b46e5d243a98
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2022, QIIME 2 development team. 3 Copyright (c) 2023, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2022.8.1) 9 q2galaxy (version: 2022.11.1)
10 for: 10 for:
11 qiime2 (version: 2022.8.1) 11 qiime2 (version: 2022.11.1)
12 --> 12 -->
13 <tool name="qiime2 feature-table merge-seqs" id="qiime2__feature_table__merge_seqs" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-table merge-seqs" id="qiime2__feature_table__merge_seqs" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
14 <description>Combine collections of feature sequences</description> 14 <description>Combine collections of feature sequences</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.8</container> 16 <container type="docker">quay.io/qiime2/core:2022.11</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version feature_table</version_command> 18 <version_command>q2galaxy version feature_table</version_command>
19 <command detect_errors="aggressive">q2galaxy run feature_table merge_seqs '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run feature_table merge_seqs '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="paths"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="data" type="data" format="qza" label="data: List[FeatureData[Sequence]]" help="[required] The collection of feature sequences to be merged." multiple="true"> 24 <param name="data" type="data" format="qza" label="data: List[FeatureData[Sequence]]" help="[required] The collection of feature sequences to be merged." multiple="true">
28 </param> 28 </param>
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name="merged_data" format="qza" label="${tool.name} on ${on_string}: merged_data.qza" from_work_dir="merged_data.qza"/> 31 <data name="merged_data" format="qza" label="${tool.name} on ${on_string}: merged_data.qza" from_work_dir="merged_data.qza"/>
32 </outputs> 32 </outputs>
33 <tests/> 33 <tests>
34 <test>
35 <param name="data" value="merge_seqs.test0.seqs1.qza,merge_seqs.test0.seqs2.qza" ftype="qza"/>
36 <output name="merged_data" ftype="qza">
37 <assert_contents>
38 <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
39 <has_line_matching expression="type: FeatureData\[Sequence\]"/>
40 </has_archive_member>
41 </assert_contents>
42 </output>
43 </test>
44 </tests>
34 <help> 45 <help>
35 QIIME 2: feature-table merge-seqs 46 QIIME 2: feature-table merge-seqs
36 ================================= 47 =================================
37 Combine collections of feature sequences 48 Combine collections of feature sequences
38 49
45 56
46 Description: 57 Description:
47 ------------ 58 ------------
48 Combines feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result. 59 Combines feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result.
49 60
61 Examples:
62 ---------
63
64 feature_table_merge_seqs
65 ************************
66 Using the ``qiime2 feature-table merge-seqs`` tool:
67 #. For *"data"*, use ctrl-(or command)-click to select the following inputs:
68
69 #. ``#: seqs1.qza``
70 #. ``#: seqs2.qza``
71
72 #. Press the ``Execute`` button.
73
74
50 75
51 | 76 |
52 77
53 </help> 78 </help>
54 <citations> 79 <citations>