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comparison qiime2__feature_table__merge_taxa.xml @ 1:0ffd4aef0c59 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author q2d2
date Fri, 13 Jan 2023 22:55:22 +0000
parents 3828e8e6487f
children a0c16a5250e4
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0:3828e8e6487f 1:0ffd4aef0c59
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2022, QIIME 2 development team. 3 Copyright (c) 2023, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2022.8.1) 9 q2galaxy (version: 2022.11.1)
10 for: 10 for:
11 qiime2 (version: 2022.8.1) 11 qiime2 (version: 2022.11.1)
12 --> 12 -->
13 <tool name="qiime2 feature-table merge-taxa" id="qiime2__feature_table__merge_taxa" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-table merge-taxa" id="qiime2__feature_table__merge_taxa" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
14 <description>Combine collections of feature taxonomies</description> 14 <description>Combine collections of feature taxonomies</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.8</container> 16 <container type="docker">quay.io/qiime2/core:2022.11</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version feature_table</version_command> 18 <version_command>q2galaxy version feature_table</version_command>
19 <command detect_errors="aggressive">q2galaxy run feature_table merge_taxa '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run feature_table merge_taxa '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="paths"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="data" type="data" format="qza" label="data: List[FeatureData[Taxonomy]]" help="[required] The collection of feature taxonomies to be merged." multiple="true"> 24 <param name="data" type="data" format="qza" label="data: List[FeatureData[Taxonomy]]" help="[required] The collection of feature taxonomies to be merged." multiple="true">
28 </param> 28 </param>
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name="merged_data" format="qza" label="${tool.name} on ${on_string}: merged_data.qza" from_work_dir="merged_data.qza"/> 31 <data name="merged_data" format="qza" label="${tool.name} on ${on_string}: merged_data.qza" from_work_dir="merged_data.qza"/>
32 </outputs> 32 </outputs>
33 <tests/> 33 <tests>
34 <test>
35 <param name="data" value="merge_taxa.test0.tax1.qza,merge_taxa.test0.tax2.qza" ftype="qza"/>
36 <output name="merged_data" ftype="qza">
37 <assert_contents>
38 <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
39 <has_line_matching expression="type: FeatureData\[Taxonomy\]"/>
40 </has_archive_member>
41 </assert_contents>
42 </output>
43 </test>
44 </tests>
34 <help> 45 <help>
35 QIIME 2: feature-table merge-taxa 46 QIIME 2: feature-table merge-taxa
36 ================================= 47 =================================
37 Combine collections of feature taxonomies 48 Combine collections of feature taxonomies
38 49
45 56
46 Description: 57 Description:
47 ------------ 58 ------------
48 Combines a pair of feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result. 59 Combines a pair of feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result.
49 60
61 Examples:
62 ---------
63
64 feature_table_merge_taxa
65 ************************
66 Using the ``qiime2 feature-table merge-taxa`` tool:
67 #. For *"data"*, use ctrl-(or command)-click to select the following inputs:
68
69 #. ``#: tax1.qza``
70 #. ``#: tax2.qza``
71
72 #. Press the ``Execute`` button.
73
74
50 75
51 | 76 |
52 77
53 </help> 78 </help>
54 <citations> 79 <citations>