Mercurial > repos > q2d2 > qiime2__feature_table__normalize
changeset 3:706e4624a7fa draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 36ec48f8c55799a0c963733df13da30f19b1bdf3
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--- a/qiime2__feature_table__normalize.xml Sat Nov 01 17:20:04 2025 +0000 +++ b/qiime2__feature_table__normalize.xml Wed Jan 28 16:26:14 2026 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2025, QIIME 2 development team. +Copyright (c) 2026, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2025.10.0) + q2galaxy (version: 2026.1.0) for: - qiime2 (version: 2025.10.0) + qiime2 (version: 2026.1.0) --> -<tool name="qiime2 feature-table normalize" id="qiime2__feature_table__normalize" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 feature-table normalize" id="qiime2__feature_table__normalize" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause"> <description>Normalize FeatureTable</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2025.10</container> + <container type="docker">quay.io/qiime2/amplicon:2026.1</container> </requirements> <version_command>q2galaxy version feature_table</version_command> <command detect_errors="exit_code">q2galaxy run feature_table normalize '$inputs'</command> @@ -30,15 +30,8 @@ </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> </param> - <param name="method" type="select" label="method: Str % Choices('tpm')¹ | Str % Choices('fpkm')² | Str % Choices('tmm')³ | Str % Choices('uq')⁴ | Str % Choices('cuf')⁵ | Str % Choices('ctf')⁶ | Str % Choices('cpm')⁷" help="[required] Specify the normalization method to be used. Use FPKM or TPM for within comparisons and TMM, UQ, CUF or CTF for between sample camparisons. Check https://www.genialis.com/wp-content/uploads/2023/12/2023-Normalizing-RNA-seq-data-in-Python-with-RNAnorm.pdf for more information on the methods."> + <param name="method" type="select" label="method: Str % (Choices('tpm')¹ | Choices('fpkm')² | Choices('tmm')³ | Choices('uq')⁴ | Choices('cuf')⁵ | Choices('ctf')⁶ | Choices('cpm')⁷)" help="[required] Specify the normalization method to be used. Use FPKM or TPM for within comparisons and TMM, UQ, CUF or CTF for between sample camparisons. Check https://www.genialis.com/wp-content/uploads/2023/12/2023-Normalizing-RNA-seq-data-in-Python-with-RNAnorm.pdf for more information on the methods."> <option value="__q2galaxy__::literal::None" selected="true">Selection required</option> - <option value="tpm">tpm (Str)</option> - <option value="fpkm">fpkm (Str)</option> - <option value="tmm">tmm (Str)</option> - <option value="uq">uq (Str)</option> - <option value="cuf">cuf (Str)</option> - <option value="ctf">ctf (Str)</option> - <option value="cpm">cpm (Str)</option> <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator> </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">