Mercurial > repos > q2d2 > qiime2__feature_table__presence_absence
comparison qiime2__feature_table__presence_absence.xml @ 0:0743a471774e draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
| author | q2d2 |
|---|---|
| date | Mon, 29 Aug 2022 19:55:29 +0000 |
| parents | |
| children | 88b3f5ff20b3 |
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| -1:000000000000 | 0:0743a471774e |
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| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <!-- | |
| 3 Copyright (c) 2022, QIIME 2 development team. | |
| 4 | |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
| 6 --> | |
| 7 <!-- | |
| 8 This tool was automatically generated by: | |
| 9 q2galaxy (version: 2022.8.1) | |
| 10 for: | |
| 11 qiime2 (version: 2022.8.1) | |
| 12 --> | |
| 13 <tool name="qiime2 feature-table presence-absence" id="qiime2__feature_table__presence_absence" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> | |
| 14 <description>Convert to presence/absence</description> | |
| 15 <requirements> | |
| 16 <container type="docker">quay.io/qiime2/core:2022.8</container> | |
| 17 </requirements> | |
| 18 <version_command>q2galaxy version feature_table</version_command> | |
| 19 <command detect_errors="aggressive">q2galaxy run feature_table presence_absence '$inputs'</command> | |
| 20 <configfiles> | |
| 21 <inputs name="inputs" data_style="paths"/> | |
| 22 </configfiles> | |
| 23 <inputs> | |
| 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency]" help="[required] The feature table to be converted into presence/absence abundances."> | |
| 25 <options options_filter_attribute="metadata.semantic_type"> | |
| 26 <filter type="add_value" value="FeatureTable[Frequency]"/> | |
| 27 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> | |
| 28 </options> | |
| 29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]']</validator> | |
| 30 </param> | |
| 31 </inputs> | |
| 32 <outputs> | |
| 33 <data name="presence_absence_table" format="qza" label="${tool.name} on ${on_string}: presence_absence_table.qza" from_work_dir="presence_absence_table.qza"/> | |
| 34 </outputs> | |
| 35 <tests/> | |
| 36 <help> | |
| 37 QIIME 2: feature-table presence-absence | |
| 38 ======================================= | |
| 39 Convert to presence/absence | |
| 40 | |
| 41 | |
| 42 Outputs: | |
| 43 -------- | |
| 44 :presence_absence_table.qza: The resulting presence/absence feature table. | |
| 45 | |
| 46 | | |
| 47 | |
| 48 Description: | |
| 49 ------------ | |
| 50 Convert frequencies to binary values indicating presence or absence of a feature in a sample. | |
| 51 | |
| 52 | |
| 53 | | |
| 54 | |
| 55 </help> | |
| 56 <citations> | |
| 57 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
| 58 </citations> | |
| 59 </tool> |