comparison qiime2__feature_table__presence_absence.xml @ 2:aa33dec8fd70 draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 65e4952f33eb335528e8553150e9097e5ea8f556
author q2d2
date Thu, 08 Jun 2023 19:46:24 +0000
parents 88b3f5ff20b3
children f2daa4bceccc
comparison
equal deleted inserted replaced
1:88b3f5ff20b3 2:aa33dec8fd70
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2022.11.1) 9 q2galaxy (version: 2023.5.0)
10 for: 10 for:
11 qiime2 (version: 2022.11.1) 11 qiime2 (version: 2023.5.1)
12 --> 12 -->
13 <tool name="qiime2 feature-table presence-absence" id="qiime2__feature_table__presence_absence" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 feature-table presence-absence" id="qiime2__feature_table__presence_absence" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
14 <description>Convert to presence/absence</description> 14 <description>Convert to presence/absence</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.11</container> 16 <container type="docker">quay.io/qiime2/core:2023.5</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version feature_table</version_command> 18 <version_command>q2galaxy version feature_table</version_command>
19 <command detect_errors="exit_code">q2galaxy run feature_table presence_absence '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run feature_table presence_absence '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="paths"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency]" help="[required] The feature table to be converted into presence/absence abundances."> 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency]" help="[required] The feature table to be converted into presence/absence abundances.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[Frequency]"/>
26 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> 27 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
27 <filter type="add_value" value="FeatureTable[Frequency]"/>
28 </options> 28 </options>
29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]']</validator> 29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]']</validator>
30 </param> 30 </param>
31 </inputs> 31 </inputs>
32 <outputs> 32 <outputs>