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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:49:53 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2024, QIIME 2 development team.
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2024.10.0)
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10 for:
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11 qiime2 (version: 2024.10.1)
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12 -->
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13 <tool name="qiime2 feature-table subsample-ids" id="qiime2__feature_table__subsample_ids" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
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14 <description>Subsample table</description>
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15 <xrefs>
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16 <xref type="bio.tools">qiime2</xref>
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17 </xrefs>
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18 <requirements>
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19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
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20 </requirements>
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21 <version_command>q2galaxy version feature_table</version_command>
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22 <command detect_errors="exit_code">q2galaxy run feature_table subsample_ids '$inputs'</command>
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23 <configfiles>
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24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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25 </configfiles>
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26 <inputs>
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27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] The feature table to be sampled.">
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28 <options options_filter_attribute="metadata.semantic_type">
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29 <filter type="add_value" value="FeatureTable[Frequency]"/>
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30 </options>
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31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
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32 </param>
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33 <param name="subsampling_depth" type="integer" min="1" value="" label="subsampling_depth: Int % Range(1, None)" help="[required] The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table."/>
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34 <param name="axis" type="select" label="axis: Str % Choices('sample', 'feature')" display="radio">
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35 <option value="__q2galaxy__::literal::None">Selection required</option>
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36 <option value="sample">sample</option>
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37 <option value="feature">feature</option>
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38 <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
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39 </param>
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40 </inputs>
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41 <outputs>
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42 <data name="sampled_table" format="qza" label="${tool.name} on ${on_string}: sampled_table.qza" from_work_dir="sampled_table.qza"/>
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43 </outputs>
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44 <tests/>
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45 <help>
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46 QIIME 2: feature-table subsample-ids
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47 ====================================
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48 Subsample table
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49
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51 Outputs:
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52 --------
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53 :sampled_table.qza: The resulting subsampled feature table.
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54
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55 |
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57 Description:
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58 ------------
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59 Randomly pick samples or features, without replacement, from the table.
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60
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62 |
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64 </help>
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65 <citations>
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66 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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67 </citations>
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68 </tool>