# HG changeset patch
# User q2d2
# Date 1769617619 0
# Node ID 41e9af5ca46bb7cecee1ab61e060803750a13320
# Parent  4d8369756ee622f06fb2d58705b6bacadffce8cc
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 36ec48f8c55799a0c963733df13da30f19b1bdf3

diff -r 4d8369756ee6 -r 41e9af5ca46b qiime2__feature_table__summarize.xml
--- a/qiime2__feature_table__summarize.xml	Sat Nov 01 17:20:38 2025 +0000
+++ b/qiime2__feature_table__summarize.xml	Wed Jan 28 16:26:59 2026 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2025, QIIME 2 development team.
+Copyright (c) 2026, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.10.0)
+    q2galaxy (version: 2026.1.0)
 for:
-    qiime2 (version: 2025.10.0)
+    qiime2 (version: 2026.1.0)
 -->
-<tool name="qiime2 feature-table summarize" id="qiime2__feature_table__summarize" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 feature-table summarize" id="qiime2__feature_table__summarize" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
     <description>Summarize table</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
     </requirements>
     <version_command>q2galaxy version feature_table</version_command>
     <command detect_errors="exit_code">q2galaxy run feature_table summarize '$inputs'</command>
@@ -32,9 +32,9 @@
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]']</validator>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
-            <repeat name="sample_metadata" help="[optional]  The sample metadata." title="sample_metadata: Metadata">
-                <conditional name="__q2galaxy__GUI__conditional__sample_metadata__">
-                    <param name="type" type="select" label="sample_metadata: Metadata">
+            <repeat name="metadata" help="[optional]  The sample metadata." title="metadata: Metadata">
+                <conditional name="__q2galaxy__GUI__conditional__metadata__">
+                    <param name="type" type="select" label="metadata: Metadata">
                         <option value="tsv" selected="true">Metadata from TSV</option>
                         <option value="qza">Metadata from Artifact</option>
                     </param>
@@ -49,12 +49,28 @@
         </section>
     </inputs>
     <outputs>
-        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+        <data name="feature_frequencies" format="qza" label="${tool.name} on ${on_string}: feature_frequencies.qza" from_work_dir="feature_frequencies.qza"/>
+        <data name="sample_frequencies" format="qza" label="${tool.name} on ${on_string}: sample_frequencies.qza" from_work_dir="sample_frequencies.qza"/>
+        <data name="summary" format="qzv" label="${tool.name} on ${on_string}: summary.qzv" from_work_dir="summary.qzv"/>
     </outputs>
     <tests>
         <test>
             <param name="table" value="summarize.test0.feature-table.qza" ftype="qza"/>
-            <output name="visualization" ftype="qzv">
+            <output name="feature_frequencies" ftype="qza">
+                <assert_contents>
+                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
+                        <has_line_matching expression="type: ImmutableMetadata"/>
+                    </has_archive_member>
+                </assert_contents>
+            </output>
+            <output name="sample_frequencies" ftype="qza">
+                <assert_contents>
+                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
+                        <has_line_matching expression="type: ImmutableMetadata"/>
+                    </has_archive_member>
+                </assert_contents>
+            </output>
+            <output name="summary" ftype="qzv">
                 <assert_contents>
                     <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
                         <has_line_matching expression="type: Visualization"/>
@@ -71,24 +87,26 @@
 
 Outputs:
 --------
-:visualization.qzv: &lt;no description&gt;
+:feature_frequencies.qza: Per-sample and total frequencies per feature.
+:sample_frequencies.qza: Observed feature count and total frequencies per sample.
+:summary.qzv: Visual summary of feature table
 
 |  
 
 Description:
 ------------
-Generate visual and tabular summaries of a feature table.
+Generate visual and tabular summaries of a feature table. Tabulate sample and feature frequencies.
 
 Examples:
 ---------
 
-feature_table_summarize
-***********************
+feature_table_summarize_
+************************
 Using the ``qiime2 feature-table summarize`` tool:
  #. Set *"table"* to ``#: feature-table.qza``
  #. Press the ``Execute`` button.
 
-Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
+Once completed, for each new entry in your history, use the ``Edit`` button to set the name as follows:
  (Renaming is optional, but it will make any subsequent steps easier to complete.)
 
  .. list-table::
@@ -97,8 +115,12 @@
 
     * - History Name
       - *"Name"* to set (be sure to press ``Save``)
-    * - ``#: qiime2 feature-table summarize [...] : visualization.qzv``
-      - ``table.qzv``
+    * - ``#: qiime2 feature-table summarize [...] : feature_frequencies.qza``
+      - ``feature-frequencies.qza``
+    * - ``#: qiime2 feature-table summarize [...] : sample_frequencies.qza``
+      - ``sample-frequencies.qza``
+    * - ``#: qiime2 feature-table summarize [...] : summary.qzv``
+      - ``visual summary.qzv``
 
 
 |  
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