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comparison qiime2__feature_table__tabulate_seqs.xml @ 0:61ef9506af71 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author q2d2
date Mon, 29 Aug 2022 19:58:46 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
2 <!--
3 Copyright (c) 2022, QIIME 2 development team.
4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 -->
7 <!--
8 This tool was automatically generated by:
9 q2galaxy (version: 2022.8.1)
10 for:
11 qiime2 (version: 2022.8.1)
12 -->
13 <tool name="qiime2 feature-table tabulate-seqs" id="qiime2__feature_table__tabulate_seqs" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
14 <description>View sequence associated with each feature</description>
15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.8</container>
17 </requirements>
18 <version_command>q2galaxy version feature_table</version_command>
19 <command detect_errors="aggressive">q2galaxy run feature_table tabulate_seqs '$inputs'</command>
20 <configfiles>
21 <inputs name="inputs" data_style="paths"/>
22 </configfiles>
23 <inputs>
24 <param name="data" type="data" format="qza" label="data: FeatureData[Sequence | AlignedSequence]" help="[required] The feature sequences to be tabulated.">
25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureData[Sequence]"/>
27 <filter type="add_value" value="FeatureData[AlignedSequence]"/>
28 </options>
29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator>
30 </param>
31 </inputs>
32 <outputs>
33 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
34 </outputs>
35 <tests/>
36 <help>
37 QIIME 2: feature-table tabulate-seqs
38 ====================================
39 View sequence associated with each feature
40
41
42 Outputs:
43 --------
44 :visualization.qzv: &lt;no description&gt;
45
46 |
47
48 Description:
49 ------------
50 Generate tabular view of feature identifier to sequence mapping, including links to BLAST each sequence against the NCBI nt database.
51
52
53 |
54
55 </help>
56 <citations>
57 <citation type="doi">10.1093/nar/gkw1071</citation>
58 <citation type="doi">10.1093/nar/gkn201</citation>
59 <citation type="doi">10.1038/s41587-019-0209-9</citation>
60 </citations>
61 </tool>