# HG changeset patch # User q2d2 # Date 1661803573 0 # Node ID 34ca8ab70ecb4f23c925f3bc7fc9fac3bd81e5e0 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__gneiss commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 diff -r 000000000000 -r 34ca8ab70ecb qiime2__gneiss__dendrogram_heatmap.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__gneiss__dendrogram_heatmap.xml Mon Aug 29 20:06:13 2022 +0000 @@ -0,0 +1,178 @@ + + + + + Dendrogram heatmap. + + quay.io/qiime2/core:2022.8 + + q2galaxy version gneiss + q2galaxy run gneiss dendrogram_heatmap '$inputs' + + + + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]'] + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Hierarchy'] + + + + + + + + + + value != "1" + + + + + + + + + +

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+ + + + + + +QIIME 2: gneiss dendrogram-heatmap +================================== +Dendrogram heatmap. + + +Outputs: +-------- +:visualization.qzv: <no description> + +| + +Description: +------------ +Visualize the feature table as a heatmap, with samples sorted along a specified categorical metadata column and features clustered together specified by the tree. + + +| + + + + @article{cite1, + author = {Morton, James T and Sanders, Jon and Quinn, Robert A and McDonald, Daniel and Gonzalez, Antonio and Vázquez-Baeza, Yoshiki and Navas-Molina, Jose A and Song, Se Jin and Metcalf, Jessica L and Hyde, Embriette R and Lladser, Manuel and Dorrestein, Pieter C and Knight, Rob}, + journal = {MSystems}, + number = {1}, + pages = {e00162--16}, + publisher = {Am Soc Microbiol}, + title = {Balance trees reveal microbial niche differentiation}, + volume = {2}, + year = {2017} +} + + 10.1038/s41587-019-0209-9 + + diff -r 000000000000 -r 34ca8ab70ecb test-data/.gitkeep