Mercurial > repos > q2d2 > qiime2__longitudinal__volatility
changeset 2:0e3d1b6523e2 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__longitudinal commit 65e4952f33eb335528e8553150e9097e5ea8f556
| author | q2d2 |
|---|---|
| date | Thu, 08 Jun 2023 19:48:47 +0000 |
| parents | bea0cdf2d9c8 |
| children | 085340f69dfe |
| files | qiime2__longitudinal__volatility.xml test-data/.gitkeep test-data/volatility.test0.metadata.tsv |
| diffstat | 2 files changed, 928 insertions(+), 5 deletions(-) [+] |
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--- a/qiime2__longitudinal__volatility.xml Fri Jan 13 22:57:39 2023 +0000 +++ b/qiime2__longitudinal__volatility.xml Thu Jun 08 19:48:47 2023 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 longitudinal volatility" id="qiime2__longitudinal__volatility" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 longitudinal volatility" id="qiime2__longitudinal__volatility" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> <description>Generate interactive volatility plot</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version longitudinal</version_command> <command detect_errors="exit_code">q2galaxy run longitudinal volatility '$inputs'</command> @@ -107,7 +107,24 @@ <outputs> <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> </outputs> - <tests/> + <tests> + <test> + <repeat name="metadata"> + <conditional name="__q2galaxy__GUI__conditional__metadata__"> + <param name="type" value="tsv"/> + <param name="source" value="volatility.test0.metadata.tsv" ftype="qiime2.tabular"/> + </conditional> + </repeat> + <param name="state_column" value="month"/> + <output name="visualization" ftype="qzv"> + <assert_contents> + <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/data\/index.html"> + <has_line_matching expression="^\s*"month": null,$"/> + </has_archive_member> + </assert_contents> + </output> + </test> + </tests> <help> QIIME 2: longitudinal volatility ================================ @@ -124,6 +141,35 @@ ------------ Generate an interactive control chart depicting the longitudinal volatility of sample metadata and/or feature frequencies across time (as set using the "state_column" parameter). Any numeric metadata column (and metadata-transformable artifacts, e.g., alpha diversity results) can be plotted on the y-axis, and are selectable using the "metric_column" selector. Metric values are averaged to compare across any categorical metadata column using the "group_column" selector. Longitudinal volatility for individual subjects sampled over time is co-plotted as "spaghetti" plots if the "individual_id_column" parameter is used. state_column will typically be a measure of time, but any numeric metadata column can be used. +Examples: +--------- + +longitudinal_volatility +*********************** +Using the ``qiime2 longitudinal volatility`` tool: + #. For *"metadata"*: + + - Perform the following steps. + + #. Leave as ``Metadata from TSV`` + #. Set *"Metadata Source"* to ``metadata.tsv`` + + + #. Set *"state_column"* to ``month`` + #. Press the ``Execute`` button. + +Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows: + (Renaming is optional, but it will make any subsequent steps easier to complete.) + + .. list-table:: + :align: left + :header-rows: 1 + + * - History Name + - *"Name"* to set (be sure to press ``Save``) + * - ``#: qiime2 longitudinal volatility [...] : visualization.qzv`` + - ``volatility-plot.qzv`` + |
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/volatility.test0.metadata.tsv Thu Jun 08 19:48:47 2023 +0000 @@ -0,0 +1,877 @@ +sample-id anti-exposed-all day-of-life delivery diet diet-3 mom-or-child month month-of-life sex studyid +#q2:types categorical numeric categorical categorical categorical categorical numeric numeric categorical categorical +10249.C001.01SS n 0 Vaginal bd eb C 0 0 Female 1 +10249.C001.02SS n 36 Vaginal bd eb C 1.2 Female 1 +10249.C001.03SS n 42 Vaginal bd eb C 1.4 Female 1 +10249.C001.04SS y 49 Vaginal bd eb C 1.6 Female 1 +10249.C001.05SS y 57 Vaginal bd eb C 1.9 Female 1 +10249.C001.06SS y 61 Vaginal bd eb C 2 Female 1 +10249.C001.07SS y 92 Vaginal bd eb C 3 Female 1 +10249.C001.08SS y 122 Vaginal bd eb C 4 Female 1 +10249.C001.09SS y 153 Vaginal bd eb C 5 Female 1 +10249.C001.10SS y 183 Vaginal bd eb C 6 Female 1 +10249.C001.11SS y 214 Vaginal bd eb C 7 Female 1 +10249.C001.12SS y 244 Vaginal bd eb C 8 Female 1 +10249.C001.13SS y 273 Vaginal bd 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Vaginal bd eb C 8 8.1 Male 17 +10249.C018.01SS n 2 Vaginal bd eb C 0 0.1 Female 18 +10249.C018.01SS.r n 2 Vaginal bd eb C 0 0.1 Female 18 +10249.C018.02SS n 33 Vaginal bd eb C 1 1.1 Female 18 +10249.C018.03SS n 90 Vaginal bd eb C 3 3 Female 18 +10249.C018.04SS n 125 Vaginal bd eb C 4 4.1 Female 18 +10249.C018.05SS n 154 Vaginal bd eb C 5 5.1 Female 18 +10249.C018.06SS n 189 Vaginal bd eb C 6 6.2 Female 18 +10249.C018.07SS n 214 Vaginal bd eb C 7 7 Female 18 +10249.C018.08SS n 244 Vaginal bd eb C 8 8 Female 18 +10249.C018.09SS n 282 Vaginal bd eb C 9 9.3 Female 18 +10249.C018.10SS n 312 Vaginal bd eb C 10 10.3 Female 18 +10249.C018.11SD n 336 Vaginal bd eb C 11 11 Female 18 +10249.C018.11SS n 336 Vaginal bd eb C 11 11 Female 18 +10249.C018.12SD n 373 Vaginal bd eb C 12 12.3 Female 18 +10249.C018.12SS n 373 Vaginal bd eb C 12 12.3 Female 18 +10249.C018.13SS n 425 Vaginal bd eb C 14 14 Female 18 +10249.C018.14SS n 489 Vaginal bd eb C 16 16.1 Female 18 +10249.C018.15SS n 548 Vaginal bd eb C 18 18 Female 18 +10249.C018.16SS n 606 Vaginal bd eb C 20 19.9 Female 18 +10249.C018.17SS y 732 Vaginal bd eb C 24 24.1 Female 18 +10249.C018.18SS y 790 Vaginal bd eb C 26 26 Female 18 +10249.C018.19SS y 853 Vaginal bd eb C 28 28 Female 18 +10249.C020.01SS n 0 Cesarean bd eb C 0 0 Female 20 +10249.C020.01SS.r n 0 Cesarean bd eb C 0 0 Female 20 +10249.C020.02SS y 7 Cesarean bd eb C 0 0.2 Female 20 +10249.C020.03SS y 9 Cesarean bd eb C 0 0.3 Female 20 +10249.C020.04SS y 11 Cesarean bd eb C 0 0.4 Female 20 +10249.C020.05SS y 13 Cesarean bd eb C 0 0.4 Female 20 +10249.C020.06SS y 15 Cesarean bd eb C 1 0.5 Female 20 +10249.C020.07SS y 33 Cesarean bd eb C 1 1.1 Female 20 +10249.C020.08SS y 69 Cesarean bd eb C 2 2.3 Female 20 +10249.C020.09SS y 95 Cesarean bd eb C 3 3.1 Female 20 +10249.C020.10SS y 123 Cesarean bd eb C 4 4 Female 20 +10249.C020.11SS y 153 Cesarean bd eb C 5 5 Female 20 +10249.C020.12SS y 180 Cesarean bd eb C 6 5.9 Female 20 +10249.C020.13SS y 211 Cesarean bd eb C 7 6.9 Female 20 +10249.C020.14SS y 243 Cesarean bd eb C 8 8 Female 20 +10249.C020.15SS y 273 Cesarean bd eb C 9 9 Female 20 +10249.C020.16SS y 305 Cesarean bd eb C 10 10 Female 20 +10249.C020.17SS y 334 Cesarean bd eb C 11 11 Female 20 +10249.C020.18SS y 365 Cesarean bd eb C 12 12 Female 20 +10249.C020.19SS y 426 Cesarean bd eb C 14 14 Female 20 +10249.C020.20SS y 487 Cesarean bd eb C 16 16 Female 20 +10249.C020.21SS y 551 Cesarean bd eb C 18 18.1 Female 20 +10249.C020.22SD y 593 Cesarean bd eb C 20 19.5 Female 20 +10249.C020.22SS y 593 Cesarean bd eb C 20 19.5 Female 20 +10249.C020.23SD y 594 Cesarean bd eb C 20 19.5 Female 20 +10249.C020.23SS y 594 Cesarean bd eb C 20 19.5 Female 20 +10249.C020.24SD y 599 Cesarean bd eb C 20 19.7 Female 20 +10249.C020.24SS y 599 Cesarean bd eb C 20 19.7 Female 20 +10249.C020.25SD y 604 Cesarean bd eb C 20 19.9 Female 20 +10249.C020.25SS y 604 Cesarean bd eb C 20 19.9 Female 20 +10249.C020.26SD y 670 Cesarean bd eb C 22 22 Female 20 +10249.C020.26SS y 670 Cesarean bd eb C 22 22 Female 20 +10249.C020.28SS y 791 Cesarean bd eb C 26 26 Female 20 +10249.C020.29SS y 856 Cesarean bd eb C 28 28.1 Female 20 +10249.C021.01SS n 1 Cesarean fd fd C 0 0 Female 21 +10249.C021.02SS n 2 Cesarean fd fd C 0 0.1 Female 21 +10249.C021.03SS n 37 Cesarean fd fd C 1 1.2 Female 21 +10249.C021.04SS n 94 Cesarean fd fd C 3 3.1 Female 21 +10249.C021.05SS n 161 Cesarean fd fd C 5 5.3 Female 21 +10249.C021.06SS n 188 Cesarean fd fd C 6 6.2 Female 21 +10249.C021.07SS n 245 Cesarean fd fd C 8 8.1 Female 21 +10249.C021.08SS n 306 Cesarean fd fd C 10 10.1 Female 21 +10249.C021.09SS n 347 Cesarean fd fd C 11 11.4 Female 21 +10249.C021.10SS n 351 Cesarean fd fd C 12 11.5 Female 21 +10249.C021.12SS y 499 Cesarean fd fd C 16 16.4 Female 21 +10249.C021.13SS y 559 Cesarean fd fd C 18 18.4 Female 21 +10249.C022.01SS n 0 Vaginal fd fd C 0 0 Male 22 +10249.C022.01SS.r n 0 Vaginal fd fd C 0 0 Male 22 +10249.C022.02SS n 32 Vaginal fd fd C 1 1.1 Male 22 +10249.C022.03SS n 63 Vaginal fd fd C 2 2.1 Male 22 +10249.C022.04SS n 96 Vaginal fd fd C 3 3.2 Male 22 +10249.C022.05SS n 122 Vaginal fd fd C 4 4 Male 22 +10249.C022.06SS n 153 Vaginal fd fd C 5 5 Male 22 +10249.C022.07SS n 182 Vaginal fd fd C 6 6 Male 22 +10249.C022.08SS n 217 Vaginal fd fd C 7 7.1 Male 22 +10249.C022.09SS n 243 Vaginal fd fd C 8 8 Male 22 +10249.C022.10SS n 273 Vaginal fd fd C 9 9 Male 22 +10249.C022.11SS n 304 Vaginal fd fd C 10 10 Male 22 +10249.C022.12SS n 342 Vaginal fd fd C 11 11.2 Male 22 +10249.C022.13SS n 370 Vaginal fd fd C 12 12.2 Male 22 +10249.C022.15SS n 489 Vaginal fd fd C 16 16.1 Male 22 +10249.C022.16SS n 551 Vaginal fd fd C 18 18.1 Male 22 +10249.C022.18SD n 671 Vaginal fd fd C 22 22.1 Male 22 +10249.C022.18SS n 671 Vaginal fd fd C 22 22.1 Male 22 +10249.C022.19SS n 737 Vaginal fd fd C 24 24.2 Male 22 +10249.C022.20SS n 791 Vaginal fd fd C 26 26 Male 22 +10249.C022.21SS n 856 Vaginal fd fd C 28 28.1 Male 22 +10249.C023.01SS n 1 Cesarean bd eb C 0 0 Male 23 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9.2 Male 25 +10249.C025.12SS n 303 Cesarean bd bd C 10 10 Male 25 +10249.C025.13SD n 337 Cesarean bd bd C 11 11.1 Male 25 +10249.C025.13SS n 337 Cesarean bd bd C 11 11.1 Male 25 +10249.C025.14SD n 365 Cesarean bd bd C 12 12 Male 25 +10249.C025.14SS n 365 Cesarean bd bd C 12 12 Male 25 +10249.C025.15SS y 428 Cesarean bd bd C 14 14.1 Male 25 +10249.C025.16SS y 489 Cesarean bd bd C 16 16.1 Male 25 +10249.C025.17SS y 548 Cesarean bd bd C 18 18 Male 25 +10249.C025.18SS y 615 Cesarean bd bd C 20 20.2 Male 25 +10249.C025.19SD y 666 Cesarean bd bd C 22 21.9 Male 25 +10249.C025.19SS y 666 Cesarean bd bd C 22 21.9 Male 25 +10249.C025.20SS y 734 Cesarean bd bd C 24 24.1 Male 25 +10249.C025.21SS y 792 Cesarean bd bd C 26 26 Male 25 +10249.C027.01SS n 1 Vaginal bd bd C 0 0 Male 27 +10249.C027.01SS.r n 1 Vaginal bd bd C 0 0 Male 27 +10249.C027.02SS n 35 Vaginal bd bd C 1 1.2 Male 27 +10249.C027.03SS n 69 Vaginal bd bd C 2 2.3 Male 27 +10249.C027.04SS n 91 Vaginal bd bd C 3 3 Male 27 +10249.C027.05SS 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fd C 12 12.1 Female 34 +10249.C034.15SD y 424 Cesarean fd fd C 14 13.9 Female 34 +10249.C034.15SS y 424 Cesarean fd fd C 14 13.9 Female 34 +10249.C034.16SS y 483 Cesarean fd fd C 16 15.9 Female 34 +10249.C034.17SD y 539 Cesarean fd fd C 18 17.7 Female 34 +10249.C034.17SS y 539 Cesarean fd fd C 18 17.7 Female 34 +10249.C035.01SS n 0 Vaginal bd eb C 0 0 Male 35 +10249.C035.01SS.r n 0 Vaginal bd eb C 0 0 Male 35 +10249.C035.02SS n 31 Vaginal bd eb C 1 1 Male 35 +10249.C035.03SS n 61 Vaginal bd eb C 2 2 Male 35 +10249.C035.04SS n 91 Vaginal bd eb C 3 3 Male 35 +10249.C035.05SS n 122 Vaginal bd eb C 4 4 Male 35 +10249.C035.06SD n 153 Vaginal bd eb C 5 5 Male 35 +10249.C035.06SS n 153 Vaginal bd eb C 5 5 Male 35 +10249.C035.07SD n 182 Vaginal bd eb C 6 6 Male 35 +10249.C035.07SS n 182 Vaginal bd eb C 6 6 Male 35 +10249.C035.08SS n 214 Vaginal bd eb C 7 7 Male 35 +10249.C035.09SS n 244 Vaginal bd eb C 8 8 Male 35 +10249.C035.10SS n 277 Vaginal bd eb C 9 9.1 Male 35 +10249.C035.11SS n 307 Vaginal bd eb C 10 10.1 Male 35 +10249.C035.12SD n 334 Vaginal bd eb C 11 11 Male 35 +10249.C035.12SS n 334 Vaginal bd eb C 11 11 Male 35 +10249.C035.13SD n 367 Vaginal bd eb C 12 12.1 Male 35 +10249.C035.13SS n 367 Vaginal bd eb C 12 12.1 Male 35 +10249.C035.14SD n 427 Vaginal bd eb C 14 14 Male 35 +10249.C035.14SS n 427 Vaginal bd eb C 14 14 Male 35 +10249.C035.15SD n 488 Vaginal bd eb C 16 16 Male 35 +10249.C035.15SS n 488 Vaginal bd eb C 16 16 Male 35 +10249.C035.16SS n 551 Vaginal bd eb C 18 18.1 Male 35 +10249.C035.17SS n 608 Vaginal bd eb C 20 20 Male 35 +10249.C036.01SS n 0 Cesarean fd fd C 0 0 Male 36 +10249.C036.01SS.r n 0 Cesarean fd fd C 0 0 Male 36 +10249.C036.02SS n 42 Cesarean fd fd C 1 1.4 Male 36 +10249.C036.03SS n 65 Cesarean fd fd C 2 2.1 Male 36 +10249.C036.04SS n 126 Cesarean fd fd C 4 4.1 Male 36 +10249.C036.05SD n 162 Cesarean fd fd C 5 5.3 Male 36 +10249.C036.05SS n 162 Cesarean fd fd C 5 5.3 Male 36 +10249.C036.07SS n 216 Cesarean fd fd C 7 7.1 Male 36 +10249.C036.08SS n 243 Cesarean fd fd C 8 8 Male 36 +10249.C036.09SS n 276 Cesarean fd fd C 9 9.1 Male 36 +10249.C036.10SS n 308 Cesarean fd fd C 10 10.1 Male 36 +10249.C036.11SS n 334 Cesarean fd fd C 11 11 Male 36 +10249.C036.12SS n 364 Cesarean fd fd C 12 12 Male 36 +10249.C036.13SS n 425 Cesarean fd fd C 14 14 Male 36 +10249.C036.14SD n 490 Cesarean fd fd C 16 16.1 Male 36 +10249.C036.14SS n 490 Cesarean fd fd C 16 16.1 Male 36 +10249.C036.15SS n 559 Cesarean fd fd C 18 18.4 Male 36 +10249.C036.16SS n 610 Cesarean fd fd C 20 20.1 Male 36 +10249.C037.01SS n 1 Cesarean fd fd C 0 0 Female 37 +10249.C037.01SS.r n 1 Cesarean fd fd C 0 0 Female 37 +10249.C037.02SS n 33 Cesarean fd fd C 1 1.1 Female 37 +10249.C037.04SS n 92 Cesarean fd fd C 3 3 Female 37 +10249.C037.05SS n 123 Cesarean fd fd C 4 4 Female 37 +10249.C037.06SS n 156 Cesarean fd fd C 5 5.1 Female 37 +10249.C037.07SS n 199 Cesarean fd fd C 7 6.5 Female 37 +10249.C037.08SS n 215 Cesarean fd fd C 7 7.1 Female 37 +10249.C037.09SS n 253 Cesarean fd fd C 8 8.3 Female 37 +10249.C037.10SS n 274 Cesarean fd fd C 9 9 Female 37 +10249.C037.11SS n 307 Cesarean fd fd C 10 10.1 Female 37 +10249.C037.12SD n 335 Cesarean fd fd C 11 11 Female 37 +10249.C037.12SS n 335 Cesarean fd fd C 11 11 Female 37 +10249.C037.13SD n 375 Cesarean fd fd C 12 12.3 Female 37 +10249.C037.13SS n 375 Cesarean fd fd C 12 12.3 Female 37 +10249.C037.14SS n 426 Cesarean fd fd C 14 14 Female 37 +10249.C037.15SS n 497 Cesarean fd fd C 16 16.3 Female 37 +10249.C037.16SS n 554 Cesarean fd fd C 18 18.2 Female 37 +10249.C037.17SS n 612 Cesarean fd fd C 20 20.1 Female 37 +10249.C037.18SS n 674 Cesarean fd fd C 22 22.2 Female 37 +10249.C038.01SS n 2 Vaginal fd fd C 0 0.1 Male 38 +10249.C038.01SS.r n 2 Vaginal fd fd C 0 0.1 Male 38 +10249.C038.02SS n 33 Vaginal fd fd C 1 1.1 Male 38 +10249.C038.04SS n 61 Vaginal fd fd C 2 2 Male 38 +10249.C038.05SD n 98 Vaginal fd fd C 3 3.2 Male 38 +10249.C038.05SS n 98 Vaginal fd fd C 3 3.2 Male 38 +10249.C038.06SD n 123 Vaginal fd fd C 4 4 Male 38 +10249.C038.06SS n 123 Vaginal fd fd C 4 4 Male 38 +10249.C038.07SD n 153 Vaginal fd fd C 5 5 Male 38 +10249.C038.07SS n 153 Vaginal fd fd C 5 5 Male 38 +10249.C038.08SS n 187 Vaginal fd fd C 6 6.1 Male 38 +10249.C038.09SS n 215 Vaginal fd fd C 7 7.1 Male 38 +10249.C038.10SS n 250 Vaginal fd fd C 8 8.2 Male 38 +10249.C038.11SS n 278 Vaginal fd fd C 9 9.1 Male 38 +10249.C038.12SD n 305 Vaginal fd fd C 10 10 Male 38 +10249.C038.12SS n 305 Vaginal fd fd C 10 10 Male 38 +10249.C038.13SD n 334 Vaginal fd fd C 11 11 Male 38 +10249.C038.13SS n 334 Vaginal fd fd C 11 11 Male 38 +10249.C038.14SS n 365 Vaginal fd fd C 12 12 Male 38 +10249.C038.15SD n 428 Vaginal fd fd C 14 14.1 Male 38 +10249.C038.15SS n 428 Vaginal fd fd C 14 14.1 Male 38 +10249.C038.16SD n 487 Vaginal fd fd C 16 16 Male 38 +10249.C038.16SS n 487 Vaginal fd fd C 16 16 Male 38 +10249.C038.18SS n 610 Vaginal fd fd C 20 20.1 Male 38 +10249.C041.01SS n 0 Vaginal bd eb C 0 0 Male 41 +10249.C041.01SS.r n 0 Vaginal bd eb C 0 0 Male 41 +10249.C041.02SS n 32 Vaginal bd eb C 1 1.1 Male 41 +10249.C041.03SS n 64 Vaginal bd eb C 2 2.1 Male 41 +10249.C041.04SS n 96 Vaginal bd eb C 3 3.2 Male 41 +10249.C041.05SD n 126 Vaginal bd eb C 4 4.1 Male 41 +10249.C041.05SS n 126 Vaginal bd eb C 4 4.1 Male 41 +10249.C041.06SD y 157 Vaginal bd eb C 5 5.2 Male 41 +10249.C041.06SS y 157 Vaginal bd eb C 5 5.2 Male 41 +10249.C041.08SS y 186 Vaginal bd eb C 6 6.1 Male 41 +10249.C041.09SS y 214 Vaginal bd eb C 7 7 Male 41 +10249.C041.10SS y 232 Vaginal bd eb C 8 7.6 Male 41 +10249.C041.11SS y 246 Vaginal bd eb C 8 8.1 Male 41 +10249.C041.12SS y 278 Vaginal bd eb C 9 9.1 Male 41 +10249.C041.13SD y 310 Vaginal bd eb C 10 10.2 Male 41 +10249.C041.13SS y 310 Vaginal bd eb C 10 10.2 Male 41 +10249.C041.14SD y 339 Vaginal bd eb C 11 11.1 Male 41 +10249.C041.14SS y 339 Vaginal bd eb C 11 11.1 Male 41 +10249.C041.16SD y 424 Vaginal bd eb C 14 13.9 Male 41 +10249.C041.16SS y 424 Vaginal bd eb C 14 13.9 Male 41 +10249.C041.17SD y 488 Vaginal bd eb C 16 16 Male 41 +10249.C041.17SS y 488 Vaginal bd eb C 16 16 Male 41 +10249.C041.18SS y 556 Vaginal bd eb C 18 18.3 Male 41 +10249.C041.19SS y 618 Vaginal bd eb C 20 20.3 Male 41 +10249.C042.01SS n 0 Vaginal fd fd C 0 0 Male 42 +10249.C042.01SS.r n 0 Vaginal fd fd C 0 0 Male 42 +10249.C042.02SS n 31 Vaginal fd fd C 1 1 Male 42 +10249.C042.03SS n 61 Vaginal fd fd C 2 2 Male 42 +10249.C042.04SS n 91 Vaginal fd fd C 3 3 Male 42 +10249.C042.05SS n 122 Vaginal fd fd C 4 4 Male 42 +10249.C042.06SD n 154 Vaginal fd fd C 5 5.1 Male 42 +10249.C042.06SS n 154 Vaginal fd fd C 5 5.1 Male 42 +10249.C042.07SS y 182 Vaginal fd fd C 6 6 Male 42 +10249.C042.08SS y 216 Vaginal fd fd C 7 7.1 Male 42 +10249.C042.09SS y 247 Vaginal fd fd C 8 8.1 Male 42 +10249.C042.10SS y 277 Vaginal fd fd C 9 9.1 Male 42 +10249.C042.11SD y 310 Vaginal fd fd C 10 10.2 Male 42 +10249.C042.11SS y 310 Vaginal fd fd C 10 10.2 Male 42 +10249.C042.12SS y 337 Vaginal fd fd C 11 11.1 Male 42 +10249.C042.13SS y 374 Vaginal fd fd C 12 12.3 Male 42 +10249.C042.14SD y 438 Vaginal fd fd C 14 14.4 Male 42 +10249.C042.14SS y 438 Vaginal fd fd C 14 14.4 Male 42 +10249.C042.15SD y 493 Vaginal fd fd C 16 16.2 Male 42 +10249.C042.15SS y 493 Vaginal fd fd C 16 16.2 Male 42 +10249.C042.16SS y 557 Vaginal fd fd C 18 18.3 Male 42 +10249.C042.17SS y 616 Vaginal fd fd C 20 20.3 Male 42 +10249.C043.01SS n 0 Vaginal fd fd C 0 0 Female 43 +10249.C043.01SS.r n 0 Vaginal fd fd C 0 0 Female 43 +10249.C043.02SS n 35 Vaginal fd fd C 1 1.2 Female 43 +10249.C043.03SS n 61 Vaginal fd fd C 2 2 Female 43 +10249.C043.04SD n 96 Vaginal fd fd C 3 3.2 Female 43 +10249.C043.04SS n 96 Vaginal fd fd C 3 3.2 Female 43 +10249.C043.05SD n 126 Vaginal fd fd C 4 4.1 Female 43 +10249.C043.05SS n 126 Vaginal fd fd C 4 4.1 Female 43 +10249.C043.06SS n 154 Vaginal fd fd C 5 5.1 Female 43 +10249.C043.07SS n 189 Vaginal fd fd C 6 6.2 Female 43 +10249.C043.08SS n 217 Vaginal fd fd C 7 7.1 Female 43 +10249.C043.09SS n 245 Vaginal fd fd C 8 8.1 Female 43 +10249.C043.10SD n 275 Vaginal fd fd C 9 9 Female 43 +10249.C043.10SS n 275 Vaginal fd fd C 9 9 Female 43 +10249.C043.11SD y 306 Vaginal fd fd C 10 10.1 Female 43 +10249.C043.11SS y 306 Vaginal fd fd C 10 10.1 Female 43 +10249.C043.12SD y 312 Vaginal fd fd C 10 10.3 Female 43 +10249.C043.12SS y 312 Vaginal fd fd C 10 10.3 Female 43 +10249.C043.14SS y 364 Vaginal fd fd C 12 12 Female 43 +10249.C043.15SD y 428 Vaginal fd fd C 14 14.1 Female 43 +10249.C043.15SS y 428 Vaginal fd fd C 14 14.1 Female 43 +10249.C043.16SS y 490 Vaginal fd fd C 16 16.1 Female 43 +10249.C043.17SS y 550 Vaginal fd fd C 18 18.1 Female 43 +10249.C043.18SS y 555 Vaginal fd fd C 18 18.2 Female 43 +10249.C043.20SS y 616 Vaginal fd fd C 20 20.3 Female 43 +10249.C044.01SS n 1 Vaginal bd eb C 0 0 Male 44 +10249.C044.02SS n 33 Vaginal bd eb C 1 1.1 Male 44 +10249.C044.03SS n 41 Vaginal bd eb C 1 1.3 Male 44 +10249.C044.04SS n 62 Vaginal bd eb C 2 2 Male 44 +10249.C044.05SS n 92 Vaginal bd eb C 3 3 Male 44 +10249.C044.06SS n 127 Vaginal bd eb C 4 4.2 Male 44 +10249.C044.07SS n 155 Vaginal bd eb C 5 5.1 Male 44 +10249.C044.08SS n 186 Vaginal bd eb C 6 6.1 Male 44 +10249.C044.09SS n 222 Vaginal bd eb C 7 7.3 Male 44 +10249.C044.10SS n 244 Vaginal bd eb C 8 8 Male 44 +10249.C044.11SS n 276 Vaginal bd eb C 9 9.1 Male 44 +10249.C044.12SD n 307 Vaginal bd eb C 10 10.1 Male 44 +10249.C044.12SS n 307 Vaginal bd eb C 10 10.1 Male 44 +10249.C044.13SD n 334 Vaginal bd eb C 11 11 Male 44 +10249.C044.13SS n 334 Vaginal bd eb C 11 11 Male 44 +10249.C044.15SD n 424 Vaginal bd eb C 14 13.9 Male 44 +10249.C044.15SS n 424 Vaginal bd eb C 14 13.9 Male 44 +10249.C044.16SS n 497 Vaginal bd eb C 16 16.3 Male 44 +10249.C044.17SS n 553 Vaginal bd eb C 18 18.2 Male 44 +10249.C045.01SS n 0 Vaginal bd eb C 0 0 Male 45 +10249.C045.02SS n 31 Vaginal bd eb C 1 1 Male 45 +10249.C045.03SS n 61 Vaginal bd eb C 2 2 Male 45 +10249.C045.04SS n 91 Vaginal bd eb C 3 3 Male 45 +10249.C045.05SD n 120 Vaginal bd eb C 4 3.9 Male 45 +10249.C045.05SS n 120 Vaginal bd eb C 4 3.9 Male 45 +10249.C045.06SS n 154 Vaginal bd eb C 5 5.1 Male 45 +10249.C045.08SD n 213 Vaginal bd eb C 7 7 Male 45 +10249.C045.08SS n 213 Vaginal bd eb C 7 7 Male 45 +10249.C045.09SD n 245 Vaginal bd eb C 8 8.1 Male 45 +10249.C045.09SS n 245 Vaginal bd eb C 8 8.1 Male 45 +10249.C045.10SD n 276 Vaginal bd eb C 9 9.1 Male 45 +10249.C045.10SS n 276 Vaginal bd eb C 9 9.1 Male 45 +10249.C045.11SS n 304 Vaginal bd eb C 10 10 Male 45 +10249.C045.12SS n 344 Vaginal bd eb C 11 11.3 Male 45 +10249.C045.13SS n 365 Vaginal bd eb C 12 12 Male 45 +10249.C046.01SS n 1 Cesarean fd fd C 0 0 Female 46 +10249.C046.02SS n 31 Cesarean fd fd C 1 1 Female 46 +10249.C046.03SS n 54 Cesarean fd fd C 2 1.8 Female 46 +10249.C046.04SS n 93 Cesarean fd fd C 3 3.1 Female 46 +10249.C046.05SS n 124 Cesarean fd fd C 4 4.1 Female 46 +10249.C046.06SD n 151 Cesarean fd fd C 5 5 Female 46 +10249.C046.06SS n 151 Cesarean fd fd C 5 5 Female 46 +10249.C046.07SD n 184 Cesarean fd fd C 6 6 Female 46 +10249.C046.07SS n 184 Cesarean fd fd C 6 6 Female 46 +10249.C046.08SS n 211 Cesarean fd fd C 7 6.9 Female 46 +10249.C046.09SD n 244 Cesarean fd fd C 8 8 Female 46 +10249.C046.09SS n 244 Cesarean fd fd C 8 8 Female 46 +10249.C046.10SD n 274 Cesarean fd fd C 9 9 Female 46 +10249.C046.10SS n 274 Cesarean fd fd C 9 9 Female 46 +10249.C046.11SD n 306 Cesarean fd fd C 10 10.1 Female 46 +10249.C046.11SS n 306 Cesarean fd fd C 10 10.1 Female 46 +10249.C046.12SS n 336 Cesarean fd fd C 11 11 Female 46 +10249.C046.13SS n 366 Cesarean fd fd C 12 12 Female 46 +10249.C046.14SS n 433 Cesarean fd fd C 14 14.2 Female 46 +10249.C047.02SD n 32 Cesarean bd eb C 1 1.1 Male 47 +10249.C047.02SS n 32 Cesarean bd eb C 1 1.1 Male 47 +10249.C047.05SS y 94 Cesarean bd eb C 3 3.1 Male 47 +10249.C047.06SD y 126 Cesarean bd eb C 4 4.1 Male 47 +10249.C047.06SS y 126 Cesarean bd eb C 4 4.1 Male 47 +10249.C047.07SD y 156 Cesarean bd eb C 5 5.1 Male 47 +10249.C047.07SS y 156 Cesarean bd eb C 5 5.1 Male 47 +10249.C047.08SD y 185 Cesarean bd eb C 6 6.1 Male 47 +10249.C047.08SS y 185 Cesarean bd eb C 6 6.1 Male 47 +10249.C047.09SS y 221 Cesarean bd eb C 7 7.3 Male 47 +10249.C047.10SS y 249 Cesarean bd eb C 8 8.2 Male 47 +10249.C047.11SS y 277 Cesarean bd eb C 9 9.1 Male 47 +10249.C047.13SS y 347 Cesarean bd eb C 11 11.4 Male 47 +10249.C049.01SS n 4 Vaginal bd bd C 0 0.1 Male 49 +10249.C049.02SD n 5 Vaginal bd bd C 0 0.2 Male 49 +10249.C049.02SS n 5 Vaginal bd bd C 0 0.2 Male 49 +10249.C049.03SD n 32 Vaginal bd bd C 1 1.1 Male 49 +10249.C049.03SS n 32 Vaginal bd bd C 1 1.1 Male 49 +10249.C049.04SS n 60 Vaginal bd bd C 2 2 Male 49 +10249.C049.07SD n 124 Vaginal bd bd C 4 4.1 Male 49 +10249.C049.07SS n 124 Vaginal bd bd C 4 4.1 Male 49 +10249.C049.08SD n 154 Vaginal bd bd C 5 5.1 Male 49 +10249.C049.08SS n 154 Vaginal bd bd C 5 5.1 Male 49 +10249.C049.09SD n 181 Vaginal bd bd C 6 6 Male 49 +10249.C049.09SS n 181 Vaginal bd bd C 6 6 Male 49 +10249.C049.10SS n 213 Vaginal bd bd C 7 7 Male 49 +10249.C049.11SS n 243 Vaginal bd bd C 8 8 Male 49 +10249.C049.12SS n 274 Vaginal bd bd C 9 9 Male 49 +10249.C049.13SS n 305 Vaginal bd bd C 10 10 Male 49 +10249.C049.14SS n 337 Vaginal bd bd C 11 11.1 Male 49 +10249.C052.02SS n 1 Vaginal bd eb C 0 0 Male 52 +10249.C052.03SD n 32 Vaginal bd eb C 1 1.1 Male 52 +10249.C052.03SS n 32 Vaginal bd eb C 1 1.1 Male 52 +10249.C052.04SD n 62 Vaginal bd eb C 2 2 Male 52 +10249.C052.04SS n 62 Vaginal bd eb C 2 2 Male 52 +10249.C052.05SD n 92 Vaginal bd eb C 3 3 Male 52 +10249.C052.06SS n 127 Vaginal bd eb C 4 4.2 Male 52 +10249.C052.07SS n 154 Vaginal bd eb C 5 5.1 Male 52 +10249.C052.08SS n 188 Vaginal bd eb C 6 6.2 Male 52 +10249.C052.09SS n 245 Vaginal bd eb C 8 8.1 Male 52 +10249.C053.02SD n 30 Cesarean bd bd C 1 1 Male 53 +10249.C053.02SS n 30 Cesarean bd bd C 1 1 Male 53 +10249.C053.03SD n 45 Cesarean bd bd C 2 1.5 Male 53 +10249.C053.03SS n 45 Cesarean bd bd C 2 1.5 Male 53 +10249.C053.04SD n 62 Cesarean bd bd C 2 2 Male 53 +10249.C053.04SS n 62 Cesarean bd bd C 2 2 Male 53 +10249.C053.05SD n 95 Cesarean bd bd C 3 3.1 Male 53 +10249.C053.05SS n 95 Cesarean bd bd C 3 3.1 Male 53 +10249.C053.06SS n 123 Cesarean bd bd C 4 4 Male 53 +10249.C053.07SS y 153 Cesarean bd bd C 5 5 Male 53 +10249.C053.08SS y 183 Cesarean bd bd C 6 6 Male 53 +10249.C053.09SS y 214 Cesarean bd bd C 7 7 Male 53 +10249.C055.01SS n 0 Cesarean fd fd C 0 0 Male 55 +10249.C055.02SD n 30 Cesarean fd fd C 1 1 Male 55 +10249.C055.02SS n 30 Cesarean fd fd C 1 1 Male 55 +10249.C055.03SD n 41 Cesarean fd fd C 1 1.3 Male 55 +10249.C055.03SS n 41 Cesarean fd fd C 1 1.3 Male 55 +10249.C055.04SD n 64 Cesarean fd fd C 2 2.1 Male 55 +10249.C055.04SS n 64 Cesarean fd fd C 2 2.1 Male 55 +10249.C055.05SD n 91 Cesarean fd fd C 3 3 Male 55 +10249.C055.05SS n 91 Cesarean fd fd C 3 3 Male 55 +10249.C055.06SS n 120 Cesarean fd fd C 4 3.9 Male 55 +10249.C055.07SS n 155 Cesarean fd fd C 5 5.1 Male 55 +10249.C055.08SS y 183 Cesarean fd fd C 6 6 Male 55 +10249.C055.09SS y 211 Cesarean fd fd C 7 6.9 Male 55 +10249.C056.01SS n 0 Cesarean bd bd C 0 0 Male 56 +10249.C056.02SS n 1 Cesarean bd bd C 0 0 Male 56 +10249.C056.03SD n 31 Cesarean bd bd C 1 1 Male 56 +10249.C056.03SS n 31 Cesarean bd bd C 1 1 Male 56 +10249.C056.04SD n 31 Cesarean bd bd C 1 1 Male 56 +10249.C056.04SS n 31 Cesarean bd bd C 1 1 Male 56 +10249.C056.05SD n 65 Cesarean bd bd C 2 2.1 Male 56 +10249.C056.05SS n 65 Cesarean bd bd C 2 2.1 Male 56 +10249.C056.06SS n 93 Cesarean bd bd C 3 3.1 Male 56 +10249.C056.07SS n 122 Cesarean bd bd C 4 4 Male 56 +10249.C056.08SS n 153 Cesarean bd bd C 5 5 Male 56 +10249.C056.09SS n 184 Cesarean bd bd C 6 6 Male 56 +10249.C056.10SS n 215 Cesarean bd bd C 7 7.1 Male 56 +10249.C057.02SS n 31 Cesarean bd eb C 1 1 Female 57 +10249.C057.03SD n 62 Cesarean bd eb C 2 2 Female 57 +10249.C057.03SS n 62 Cesarean bd eb C 2 2 Female 57 +10249.C057.04SD n 91 Cesarean bd eb C 3 3 Female 57 +10249.C057.04SS n 91 Cesarean bd eb C 3 3 Female 57 +10249.C057.05SD n 125 Cesarean bd eb C 4 4.1 Female 57 +10249.C057.05SS n 125 Cesarean bd eb C 4 4.1 Female 57 +10249.C057.06SS n 157 Cesarean bd eb C 5 5.2 Female 57 +10249.C057.08SS n 215 Cesarean bd eb C 7 7.1 Female 57 +10249.C057.09SS y 238 Cesarean bd eb C 8 7.8 Female 57 +10249.C057.10SS y 244 Cesarean bd eb C 8 8 Female 57 +10249.C057.11SS y 277 Cesarean bd eb C 9 9.1 Female 57