Mercurial > repos > q2d2 > qiime2__metadata__distance_matrix

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author q2d2
date Wed, 30 Oct 2024 19:53:28 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2024, QIIME 2 development team.
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2024.10.0)
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10 for:
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11 qiime2 (version: 2024.10.1)
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12 -->
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13 <tool name="qiime2 metadata distance-matrix" id="qiime2__metadata__distance_matrix" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
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14 <description>Create a distance matrix from a numeric Metadata column</description>
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15 <xrefs>
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16 <xref type="bio.tools">qiime2</xref>
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17 </xrefs>
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18 <requirements>
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19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
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20 </requirements>
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21 <version_command>q2galaxy version metadata</version_command>
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22 <command detect_errors="exit_code">q2galaxy run metadata distance_matrix '$inputs'</command>
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23 <configfiles>
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24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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25 </configfiles>
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26 <inputs>
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27 <conditional name="metadata">
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28 <param name="type" type="select" label="metadata: MetadataColumn[Numeric]" help="[required] Numeric metadata column to compute pairwise Euclidean distances from">
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29 <option value="tsv" selected="true">Metadata from TSV</option>
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30 <option value="qza">Metadata from Artifact</option>
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31 </param>
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32 <when value="tsv">
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33 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
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34 <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true">
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35 <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator>
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36 </param>
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37 </when>
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38 <when value="qza">
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39 <param name="source" type="data" format="qza" label="Metadata Source"/>
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40 <param name="column" type="text" label="Column Name">
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41 <validator type="empty_field"/>
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42 </param>
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43 </when>
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44 </conditional>
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45 </inputs>
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46 <outputs>
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47 <data name="distance_matrix" format="qza" label="${tool.name} on ${on_string}: distance_matrix.qza" from_work_dir="distance_matrix.qza"/>
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48 </outputs>
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49 <tests/>
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50 <help>
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51 QIIME 2: metadata distance-matrix
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52 =================================
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53 Create a distance matrix from a numeric Metadata column
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54
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55
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56 Outputs:
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57 --------
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58 :distance_matrix.qza: &lt;no description&gt;
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59
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60 |
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61
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62 Description:
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63 ------------
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64 Create a distance matrix from a numeric metadata column. The Euclidean distance is computed between each pair of samples or features in the column.
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65
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66 Tip: the distance matrix produced by this method can be used as input to the Mantel test available in `q2-diversity`.
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67
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69 |
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71 </help>
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72 <citations>
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73 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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74 </citations>
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75 </tool>