Mercurial > repos > q2d2 > qiime2__metadata__distance_matrix
comparison qiime2__metadata__distance_matrix.xml @ 0:c6f80266af38 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
| author | q2d2 |
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| date | Mon, 29 Aug 2022 20:13:56 +0000 |
| parents | |
| children | a75c3ed80cff |
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| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <!-- | |
| 3 Copyright (c) 2022, QIIME 2 development team. | |
| 4 | |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
| 6 --> | |
| 7 <!-- | |
| 8 This tool was automatically generated by: | |
| 9 q2galaxy (version: 2022.8.1) | |
| 10 for: | |
| 11 qiime2 (version: 2022.8.1) | |
| 12 --> | |
| 13 <tool name="qiime2 metadata distance-matrix" id="qiime2__metadata__distance_matrix" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> | |
| 14 <description>Create a distance matrix from a numeric Metadata column</description> | |
| 15 <requirements> | |
| 16 <container type="docker">quay.io/qiime2/core:2022.8</container> | |
| 17 </requirements> | |
| 18 <version_command>q2galaxy version metadata</version_command> | |
| 19 <command detect_errors="aggressive">q2galaxy run metadata distance_matrix '$inputs'</command> | |
| 20 <configfiles> | |
| 21 <inputs name="inputs" data_style="paths"/> | |
| 22 </configfiles> | |
| 23 <inputs> | |
| 24 <conditional name="metadata"> | |
| 25 <param name="type" type="select" label="metadata: MetadataColumn[Numeric]" help="[required] Numeric metadata column to compute pairwise Euclidean distances from"> | |
| 26 <option value="tsv" selected="true">Metadata from TSV</option> | |
| 27 <option value="qza">Metadata from Artifact</option> | |
| 28 </param> | |
| 29 <when value="tsv"> | |
| 30 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/> | |
| 31 <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true"> | |
| 32 <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator> | |
| 33 </param> | |
| 34 </when> | |
| 35 <when value="qza"> | |
| 36 <param name="source" type="data" format="qza" label="Metadata Source"/> | |
| 37 <param name="column" type="text" label="Column Name"> | |
| 38 <validator type="empty_field"/> | |
| 39 </param> | |
| 40 </when> | |
| 41 </conditional> | |
| 42 </inputs> | |
| 43 <outputs> | |
| 44 <data name="distance_matrix" format="qza" label="${tool.name} on ${on_string}: distance_matrix.qza" from_work_dir="distance_matrix.qza"/> | |
| 45 </outputs> | |
| 46 <tests/> | |
| 47 <help> | |
| 48 QIIME 2: metadata distance-matrix | |
| 49 ================================= | |
| 50 Create a distance matrix from a numeric Metadata column | |
| 51 | |
| 52 | |
| 53 Outputs: | |
| 54 -------- | |
| 55 :distance_matrix.qza: <no description> | |
| 56 | |
| 57 | | |
| 58 | |
| 59 Description: | |
| 60 ------------ | |
| 61 Create a distance matrix from a numeric metadata column. The Euclidean distance is computed between each pair of samples or features in the column. | |
| 62 | |
| 63 Tip: the distance matrix produced by this method can be used as input to the Mantel test available in `q2-diversity`. | |
| 64 | |
| 65 | |
| 66 | | |
| 67 | |
| 68 </help> | |
| 69 <citations> | |
| 70 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
| 71 </citations> | |
| 72 </tool> |