Mercurial > repos > q2d2 > qiime2__metadata__distance_matrix
diff qiime2__metadata__distance_matrix.xml @ 0:c6f80266af38 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author | q2d2 |
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date | Mon, 29 Aug 2022 20:13:56 +0000 |
parents | |
children | a75c3ed80cff |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__metadata__distance_matrix.xml Mon Aug 29 20:13:56 2022 +0000 @@ -0,0 +1,72 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2022, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2022.8.1) +for: + qiime2 (version: 2022.8.1) +--> +<tool name="qiime2 metadata distance-matrix" id="qiime2__metadata__distance_matrix" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> + <description>Create a distance matrix from a numeric Metadata column</description> + <requirements> + <container type="docker">quay.io/qiime2/core:2022.8</container> + </requirements> + <version_command>q2galaxy version metadata</version_command> + <command detect_errors="aggressive">q2galaxy run metadata distance_matrix '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="paths"/> + </configfiles> + <inputs> + <conditional name="metadata"> + <param name="type" type="select" label="metadata: MetadataColumn[Numeric]" help="[required] Numeric metadata column to compute pairwise Euclidean distances from"> + <option value="tsv" selected="true">Metadata from TSV</option> + <option value="qza">Metadata from Artifact</option> + </param> + <when value="tsv"> + <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/> + <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true"> + <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator> + </param> + </when> + <when value="qza"> + <param name="source" type="data" format="qza" label="Metadata Source"/> + <param name="column" type="text" label="Column Name"> + <validator type="empty_field"/> + </param> + </when> + </conditional> + </inputs> + <outputs> + <data name="distance_matrix" format="qza" label="${tool.name} on ${on_string}: distance_matrix.qza" from_work_dir="distance_matrix.qza"/> + </outputs> + <tests/> + <help> +QIIME 2: metadata distance-matrix +================================= +Create a distance matrix from a numeric Metadata column + + +Outputs: +-------- +:distance_matrix.qza: <no description> + +| + +Description: +------------ +Create a distance matrix from a numeric metadata column. The Euclidean distance is computed between each pair of samples or features in the column. + +Tip: the distance matrix produced by this method can be used as input to the Mantel test available in `q2-diversity`. + + +| + +</help> + <citations> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>