Mercurial > repos > q2d2 > qiime2__metadata__shuffle_groups

comparison qiime2__metadata__shuffle_groups.xml @ 3:7428c64149fb draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:16:39 +0000
parents 99fb88cf7a12
children e5920de13a94
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2:99fb88cf7a12 3:7428c64149fb
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 metadata shuffle-groups" id="qiime2__metadata__shuffle_groups" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 metadata shuffle-groups" id="qiime2__metadata__shuffle_groups" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>Shuffle values in a categorical sample metadata column.</description> 14 <description>Shuffle values in a categorical sample metadata column.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version metadata</version_command> 18 <version_command>q2galaxy version metadata</version_command>
19 <command detect_errors="exit_code">q2galaxy run metadata shuffle_groups '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run metadata shuffle_groups '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <conditional name="metadata"> 24 <conditional name="metadata">
25 <param name="type" type="select" label="metadata: MetadataColumn[Categorical]" help="[required] Categorical metadata column to shuffle."> 25 <param name="type" type="select" label="metadata: MetadataColumn[Categorical]" help="[required] Categorical metadata column to shuffle.">
26 <option value="tsv" selected="true">Metadata from TSV</option> 26 <option value="tsv" selected="true">Metadata from TSV</option>
39 </param> 39 </param>
40 </when> 40 </when>
41 </conditional> 41 </conditional>
42 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 42 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
43 <param name="n_columns" type="integer" value="3" label="n_columns: Int" help="[default: 3] The number of shuffled metadata columns to create."/> 43 <param name="n_columns" type="integer" value="3" label="n_columns: Int" help="[default: 3] The number of shuffled metadata columns to create."/>
44 <param name="column_name_prefix" type="text" value="shuffled.grouping." label="column_name_prefix: Str" help="[default: 'shuffled.grouping.'] Prefix to use in naming the shuffled metadata columns."> 44 <param name="md_column_name_prefix" type="text" value="shuffled.grouping." label="md_column_name_prefix: Str" help="[default: 'shuffled.grouping.'] Prefix to use in naming the shuffled metadata columns.">
45 <sanitizer> 45 <sanitizer>
46 <valid initial="string.printable"/> 46 <valid initial="string.printable"/>
47 </sanitizer> 47 </sanitizer>
48 </param> 48 </param>
49 <param name="column_value_prefix" type="text" value="fake.group." label="column_value_prefix: Str" help="[default: 'fake.group.'] Prefix to use in naming the values in the shuffled metadata columns."> 49 <param name="md_column_values_prefix" type="text" value="fake.group." label="md_column_values_prefix: Str" help="[default: 'fake.group.'] Prefix to use in naming the values in the shuffled metadata columns.">
50 <sanitizer> 50 <sanitizer>
51 <valid initial="string.printable"/> 51 <valid initial="string.printable"/>
52 </sanitizer> 52 </sanitizer>
53 </param> 53 </param>
54 <param name="encode_sample_size" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="encode_sample_size: Bool" help="[default: No] If true, the sample size of each metadata group will be appended to the shuffled metadata column values."/>
54 </section> 55 </section>
55 </inputs> 56 </inputs>
56 <outputs> 57 <outputs>
57 <data name="shuffled_groups" format="qza" label="${tool.name} on ${on_string}: shuffled_groups.qza" from_work_dir="shuffled_groups.qza"/> 58 <data name="shuffled_groups" format="qza" label="${tool.name} on ${on_string}: shuffled_groups.qza" from_work_dir="shuffled_groups.qza"/>
58 </outputs> 59 </outputs>